CATH Domain: 2hddB00 XML data for domain: 2hddB00

Molscript image for 2hddB00
2hddB00
PDB coordinates for domain 2hddB00

PDB 2hdd, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.8
1.10.10.60.8.1
1.10.10.60.8.1.1
1.10.10.60.8.1.1.1
1.10.10.60.8.1.1.1.1

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Segment boundaries for domain 2hddB00

Chopping figure for domain 2hddB00
DomainStart PDB ResidueStop PDB Residue
2hddB00 2 57

Structural Neighbourhood (32 entries)

There are 32 matching structural neighberhood comparisons for CATH ID 1.10.10.60.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 32 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jggA00 95.13 Trunk segmentationMotor axon guidanceMuscle organ developmentHomeobox even-skipped homolog proteinSegmentation protein even-skipped 1.10.10.60 57 46 96 0.99 1.03
1au7A02 94.53 Positive regulation of transcription from RNA polymerase II promoterRattus norvegicusNucleusNegative regulation of transcription from RNA polymerase II promoterAdenohypophysis development 1.10.10.60 57 26 96 0.97 1.01
1o4xA02 93.77 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 24 91 0.93 1.02
1b8iA00 93.49 Protein domain specific bindingDrosophila melanogasterPositive regulation of muscle organ developmentMesodermal cell fate specificationTranscription repressor activity 1.10.10.60 62 44 90 4.04 4.47
1mh3A03 92.94 Transcription corepressor activityMeiosis - yeastNucleusRegulation of transcription, mating-type specificMating-type protein A1 1.10.10.60 51 27 91 1.64 1.80
2dmqA01 92.33 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 28 87 0.88 1.00
1e3oC02 92.12 POU domain transcription factor, class 2POU domain, class 2, transcription factor 1Protein bindingSequence-specific DNA binding transcription factor activityNegative regulation of transcription, DNA-dependent 1.10.10.60 48 25 85 0.98 1.14
1b8iB00 91.97 Oenocyte developmentLeg disc proximal/distal pattern formationTranscription factor complexBrain developmentDrosophila melanogaster 1.10.10.60 58 28 91 1.16 1.27
1b72A00 91.91 Homeobox protein Hox-B1Protein domain specific bindingHomeobox protein HoxA/B/D1Homo sapiens 1.10.10.60 68 48 82 3.24 3.93
1nk3P00 90.01 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 39 88 1.54 1.73
1pufB00 88.31 CytoplasmPre-B-cell leukemia transcription factor 1Transcription factor bindingPre-B-cell leukemia transcription factorNucleus 1.10.10.60 73 28 76 1.97 2.57
1le8B00 87.21 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Donor selectionSequence-specific DNA binding 1.10.10.60 74 30 72 1.54 2.11
1wjhA00 86.66 1.10.10.60 76 28 73 3.00 4.07
1lfbA00 86.51 Positive regulation of transcription from RNA polymerase II promoterTranscription factor bindingRattus norvegicusNegative regulation of transcriptionDouble-stranded DNA binding 1.10.10.60 77 17 68 1.12 1.63
1mnmC00 86.11 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 77 30 72 2.66 3.66
1w0tA00 85.84 Protein homooligomerizationPositive regulation of mitotic cell cycleTelomere maintenance via telomere shorteningNegative regulation of telomerase activityG2/M transition of mitotic cell cycle 1.10.10.60 52 9 87 2.83 3.23
1tc3C00 85.64 Caenorhabditis elegansTransposable element Tc3 transposase 1.10.10.60 51 15 89 3.83 4.29
1ic8A02 85.49 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 17 71 1.17 1.63
1gv2A02 84.31 Transcriptional activator MybNucleusEmbryonic digestive tract developmentProtein bindingMus musculus 1.10.10.60 46 13 80 2.54 3.16
1bobA03 83.34 Chromatin silencing at telomereHistone acetyltransferase 1 [EC:2.3.1.48]Histone acetyltransferase type B catalytic subunitHistone acetyltransferase activityProtein binding 1.10.10.390 54 11 92 2.88 3.10
1fexA00 82.78 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 12 84 2.47 2.91
1gdtB03 82.60 Transposon gamma-delta resolvaseEscherichia coli K-12 1.10.10.60 45 2 78 3.80 4.84
1wh5A00 82.47 Arabidopsis thalianaZF-HD homeobox protein At5g65410 1.10.10.60 80 25 70 2.58 3.69
1iv6A00 82.42 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 10 96 3.61 3.74
2k9nA02 81.38 MYB24Trichomonas vaginalis 1.10.10.60 54 5 85 3.34 3.90
1hcrA00 80.34 Salmonella enterica subsp. enterica serovar TyphimuriumDNA-invertase hin 1.10.10.60 52 15 80 3.68 4.58
1k6yA01 79.90 POL polyproteinHuman immunodeficiency virus 1 1.10.10.200 46 8 78 3.75 4.77
2dflA01 78.90 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 60 10 88 4.08 4.62
3bqzA01 77.53 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 12 75 3.65 4.87
1ignA01 77.17 Chromatin silencing at telomereProtein bindingMyb-like DNA-binding protein RAP1Protection from non-homologous end joining at telomereDNA-binding protein RAP1 1.10.10.60 93 12 55 2.57 4.60
1ignB02 75.01 Chromatin silencing at telomereMyb-like DNA-binding protein RAP1Protein bindingProtection from non-homologous end joining at telomereDNA-binding protein RAP1 1.10.10.60 92 14 56 2.79 4.94
1s7eA02 73.64 One cut domain, family member 1, hepatocyte nuclear factor 6Endoderm developmentPositive regulation of gene-specific transcription from RNA polymerase II promoterEndocrine pancreas developmentRegulation of cell-matrix adhesion 1.10.10.60 74 28 70 3.19 4.54
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Displaying entries 1 to 32 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2hddB00
KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2hddB00
MAEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"