CATH Domain: 2hdcA00 XML data for domain: 2hdcA00

Molscript image for 2hdcA00
2hdcA00
PDB coordinates for domain 2hdcA00

PDB 2hdc, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.205
1.10.10.10.205.3
1.10.10.10.205.3.1
1.10.10.10.205.3.1.2
1.10.10.10.205.3.1.2.1

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Segment boundaries for domain 2hdcA00

Chopping figure for domain 2hdcA00
DomainStart PDB ResidueStop PDB Residue
2hdcA00 2 98

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 1.10.10.10.205.3.1.2.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1oyiA00 79.82 Vaccinia virusDouble-stranded RNA-binding protein 1.10.10.10 62 17 65 2.39 3.65
2jt1A00 78.75 PefI proteinSalmonella enterica subsp. enterica serovar Typhimurium 1.10.10.10 71 14 71 3.50 4.92
1s6lA01 73.25 Alkylmercury lyaseEscherichia coli 1.10.10.10 52 1 57 2.77 4.79
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2hdcA00
VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP
QSEDMFDNGSFLRRRKR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2hdcA00
VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP
QSEDMFDNGSFLRRRKR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"