CATH Domain: 2h6fB00

2h6fB00

PDB 2h6f, Chain B, Domain 0

CATH Code	Level Description	Links
1	Mainly Alpha
1.50	Alpha/alpha barrel
1.50.10	Glycosyltransferase
1.50.10.20		Gene3D
1.50.10.20.5
1.50.10.20.5.1
1.50.10.20.5.1.1
1.50.10.20.5.1.1.1
1.50.10.20.5.1.1.1.1

Structure
Sequence
History

[top]
Segment boundaries for domain 2h6fB00

Domain	Start PDB Residue	Stop PDB Residue
2h6fB00	515	924

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 1.50.10.20.5.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	1n4qB00	84.34	CAAX-protein geranylgeranyltransferase activityResponse to cytokine stimulusRattus norvegicusPositive regulation of cell proliferationResponse to protein stimulus	1.50.10.20	346	26	76	1.96	2.56

[top]
Domain ATOM Sequence

>pdb|2h6fB00
SSPVWSEPLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYE
CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINR
EKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFC
GLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQA
LQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTY
FLQKPVPGFE

BLAST against CATH

[top]
Domain COMBS Sequence

>pdb|2h6fB00
MASPSSFTYYCPPSSSPVWSEPLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFH
YLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNAL
CIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIG
GVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGD
PALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPV
YNIGPDKVIQATTYFLQKPVPGFEELKDETSAEPATD

BLAST against CATH

[top]
Domain History Events (14)

Domain assigned by auto on 02 Nov 2006 06:28

Assigning to "1.50.10.20" based on similarity with "1jcqB00"

Flow stage update by auto on 02 Nov 2006 06:13

No in_process hits for Domain "2h6fB00" ready to be processed

Update comment by auto on 02 Nov 2006 03:17

Domain "2h6fB00" hits Domain "2h6iB00" (99.5423340961098% over 100%) which is currently in process

Update comment by auto on 01 Nov 2006 21:57

Domain "2h6fB00" hits Domain "2h6gB00" (99.7711670480549% over 100%) which is currently in process