CATH Domain: 2h6fA00

2h6fA00

PDB 2h6f, Chain A, Domain 0

CATH Code	Level Description	Links
1	Mainly Alpha
1.25	Alpha Horseshoe
1.25.40	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
1.25.40.120		Gene3D
1.25.40.120.1
1.25.40.120.1.1
1.25.40.120.1.1.1
1.25.40.120.1.1.1.1
1.25.40.120.1.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2h6fA00

Domain	Start PDB Residue	Stop PDB Residue
2h6fA00	55	369

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.

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Domain ATOM Sequence

>pdb|2h6fA00
FVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVW
HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK
LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPN
LLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHST

BLAST against CATH

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Domain COMBS Sequence

>pdb|2h6fA00
FVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVW
HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK
LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPN
LLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSP
TNVQQEEF

BLAST against CATH

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Domain History Events (14)

Domain assigned by auto on 02 Nov 2006 06:28

Assigning to "1.25.40.120" based on similarity with "2h6gA00"

Flow stage update by auto on 02 Nov 2006 06:13

No in_process hits for Domain "2h6fA00" ready to be processed

Update comment by auto on 02 Nov 2006 03:17

Domain "2h6fA00" hits Domain "2h6gA00" (100% over 100%) which is currently in process

Update comment by auto on 01 Nov 2006 21:57

Domain "2h6fA00" hits Domain "2h6iA00" (100% over 100%) which is currently in process