CATH Domain: 2h5xA03 XML data for domain: 2h5xA03

Molscript image for 2h5xA03
2h5xA03
PDB coordinates for domain 2h5xA03

PDB 2h5x, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.10 DNA helicase RuvA subunit, C-terminal domain Gene3D
1.10.8.10.10
1.10.8.10.10.1
1.10.8.10.10.1.1
1.10.8.10.10.1.1.1
1.10.8.10.10.1.1.1.1

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Segment boundaries for domain 2h5xA03

Chopping figure for domain 2h5xA03
DomainStart PDB ResidueStop PDB Residue
2h5xA01 1 64
2h5xA02 65 133
2h5xA03 146 195

Structural Neighbourhood (28 entries)

There are 28 matching structural neighberhood comparisons for CATH ID 1.10.8.10.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 28 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1bvsF03 92.51 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAMycobacterium lepraeHolliday junction DNA helicase RuvA 1.10.8.10 45 80 88 0.58 0.66
1ixrB03 92.49 Homologous recombinationThermus thermophilus HB8Holliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAProtein binding 1.10.8.10 53 30 90 0.85 0.94
1a5tA02 87.50 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.10 40 15 78 1.66 2.13
1ifyA00 86.32 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 49 8 82 2.03 2.48
1dv0A00 85.75 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 45 17 80 1.79 2.24
1otrA00 84.76 Saccharomyces cerevisiaeProtein bindingUbiquitin-binding protein CUE2 1.10.8.10 49 10 82 2.27 2.77
1tteA02 82.59 Ubiquitin-conjugating enzyme E2-24 kDaIdentical protein bindingProtein polyubiquitinationUbiquitin-conjugating enzyme (huntingtin interacting protein 2) [EC:6.3.2.19]Ubiquitin mediated proteolysis 1.10.8.10 57 10 78 2.43 3.08
1deeG00 82.09 Staphylococcus aureus subsp. aureus NCTC 8325Immunoglobulin G-binding protein A 1.20.5.420 51 8 94 4.11 4.37
1v92A00 81.97 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 1.10.8.10 46 10 76 2.79 3.67
1q02A00 81.48 Positive regulation of transcription from RNA polymerase II promoterProtein localizationProtein kinase C bindingCytosolUbiquitin binding 1.10.8.10 52 10 78 2.48 3.15
1okkD01 81.09 Cell division protein ftsYThermus aquaticusProtein binding 1.20.120.140 58 18 84 2.35 2.78
2j5yA00 80.94 Peptostreptococcal albumin-binding proteinFinegoldia magna 1.10.8.40 61 8 73 3.39 4.60
1sxjE02 80.89 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 12 62 2.35 3.76
1s26D01 79.82 Calcium signaling pathwayPhosphatidylinositol signaling systemOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 59 10 81 2.73 3.36
1wivA00 79.66 Embryo development ending in seed dormancyUbiquitin carboxyl-terminal hydrolase 5/13 [EC:3.1.2.15]Ubiquitin carboxyl-terminal hydrolase 14Arabidopsis thalianaUbiquitin-specific protease activity 1.10.8.10 73 16 56 2.35 4.18
2chgA02 78.91 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 12 62 2.47 3.98
1h3lB00 77.78 RNA polymerase sigma factorStreptomyces coelicolorRNA polymerase sigma-70 factor, ECF subfamily 1.10.1740.10 78 10 64 2.69 4.20
2hwjA02 77.66 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 1.10.8.10 59 24 79 3.66 4.59
3b7nA01 77.45 CRAL-TRIO domain-containing protein YKL091CNucleusSaccharomyces cerevisiae 1.10.8.20 79 0 51 2.58 4.97
2qq8A02 76.68 Homo sapiensTBC1 domain family member 14 1.10.8.270 94 10 47 1.97 4.12
1jr3D03 76.48 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 4 56 2.27 4.03
1rj9A01 76.43 Cell division protein ftsYThermus aquaticusProtein binding 1.20.120.140 81 18 60 2.14 3.54
1l8qA02 75.74 Two-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaAAquifex aeolicus 1.10.8.60 49 10 82 3.96 4.83
1k90E01 75.10 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 74 12 66 3.27 4.94
3doaA02 72.60 Fibrinogen binding proteinStaphylococcus aureus subsp. aureus Mu50 1.10.8.50 70 4 62 3.12 4.96
1j09A04 71.48 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 1.10.8.70 48 10 82 4.03 4.91
1g41A02 71.02 ATP-dependent hsl protease ATP-binding subunit hslUHaemophilus influenzaeATP-dependent HslUV protease ATP-binding subunit HslU 1.10.8.10 30 6 36 1.10 3.06
1eijA00 69.78 Methanothermobacter thermautotrophicus str. Delta HDNA-binding protein MTH_1615 1.10.8.140 72 6 54 2.63 4.86
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Displaying entries 1 to 28 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2h5xA03
AVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGKA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2h5xA03
AATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGKAR
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 07 Dec 2006 09:22

Assigning to "1.10.8.10" based on similarity with "1bvsA03"

Flow stage update by auto on 07 Dec 2006 09:19

No in_process hits for Domain "2h5xA03" ready to be processed

Flow stage update by auto on 07 Dec 2006 09:19

NW result present for Domain "2h5xA03"

Flow stage update by auto on 06 Dec 2006 17:23

All required files are present for Domain "2h5xA03"

Flow stage update by auto on 05 Dec 2006 17:30

Beginning processing for Domain "2h5xA03"

Insertion by auto on 05 Dec 2006 17:27

Final ChopClose added based on similarity with "2h5xB"