CATH Domain: 2gmeA00 XML data for domain: 2gmeA00

Molscript image for 2gmeA00
2gmeA00
PDB coordinates for domain 2gmeA00

PDB 2gme, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.200 Gene3D
2.60.120.200.15
2.60.120.200.15.1
2.60.120.200.15.1.1
2.60.120.200.15.1.1.1
2.60.120.200.15.1.1.1.1

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Segment boundaries for domain 2gmeA00

Chopping figure for domain 2gmeA00
DomainStart PDB ResidueStop PDB Residue
2gmeA00 2 239

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.60.120.200.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1avbA00 90.57 Arcelin-1Phaseolus vulgaris 2.60.120.200 226 32 91 1.57 1.72
2eigA00 89.69 Lotus tetragonolobusLectin 2.60.120.200 230 38 92 1.65 1.79
2ltnA00 86.59 Pisum sativumLectin 2.60.120.200 181 43 75 1.37 1.82
1ux6A02 77.19 ECM-receptor interactionPositive regulation of tumor necrosis factor biosynthetic processPositive regulation of angiogenesisProteoglycan bindingNegative regulation of caspase activity 2.60.120.200 208 8 75 3.66 4.87
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2gmeA00
DSLSFGFPTFPSDQKNLIFQGDAQIKNNAVQLTKTDSNGNPVASTVGRILFSAQVHLWEKSSSRVANFQSQFSFSLKSPL
SNGADGIAFFIAPPDTTIPSGSGGGLLGLFAPNQVIAVEFDTFYNTWDPNYPHIGIDVNSIRSVKTVKWDRRDGQSLNVL
VTFNPSTRNLDVVATYSDGTRYEVSYEVDVRSVLPEWVRVGFSAASGEQYQTHTLESWSFTSTLLY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2gmeA00
XDSLSFGFPTFPSDQKNLIFQGDAQIKNNAVQLTKTDSNGNPVASTVGRILFSAQVHLWEKSSSRVANFQSQFSFSLKSP
LSNGADGIAFFIAPPDTTIPSGSGGGLLGLFAPGTAQNTSANQVIAVEFDTFYAQDSNTWDPNYPHIGIDVNSIRSVKTV
KWDRRDGQSLNVLVTFNPSTRNLDVVATYSDGTRYEVSYEVDVRSVLPEWVRVGFSAASGEQYQTHTLESWSFTSTLLYT
AQKKGENLALEM
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 03 Dec 2006 01:31

Assigning to "2.60.120.200" based on similarity with "1n3oA00"

Flow stage update by auto on 03 Dec 2006 01:25

No in_process hits for Domain "2gmeA00" ready to be processed

Flow stage update by auto on 03 Dec 2006 01:25

NW result present for Domain "2gmeA00"

Flow stage update by auto on 29 Nov 2006 13:24

All required files are present for Domain "2gmeA00"

Flow stage update by auto on 28 Nov 2006 21:32

Beginning processing for Domain "2gmeA00"

Insertion by auto on 28 Nov 2006 21:30

Final ChopClose added based on similarity with "1n3oA"