CATH Domain: 2gm5B00

2gm5B00

PDB 2gm5, Chain B, Domain 0

CATH Code	Level Description	Links
3	Alpha Beta
3.40	3-Layer(aba) Sandwich
3.40.50	Rossmann fold
3.40.50.1390		Gene3D
3.40.50.1390.1
3.40.50.1390.1.1
3.40.50.1390.1.1.1
3.40.50.1390.1.1.1.1
3.40.50.1390.1.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2gm5B00

Domain	Start PDB Residue	Stop PDB Residue
2gm5B00	2	123

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.50.1390.1.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	2rslA00	91.71	Transposon gamma-delta resolvaseEscherichia coli K-12	3.40.50.1390	114	90	94	1.38	1.46

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Domain ATOM Sequence

>pdb|2gm5B00
ALFGYARVSTSLDIQVRALKDAGVKANRIFTDKADRKGLDLLRKVKEGDVILVKKLDHLGRDTADIQLIKEFDAQGVSIR
FIDDGISTDSYIGKVVTILSAVAQAERQRIL

BLAST against CATH

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Domain COMBS Sequence

>pdb|2gm5B00
ALFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRXKVKEGDVILVKKLDHLGRDTADXIQLIK
EFDAQGVSIRFIDDGISTDSYIGKXVVTILSAVAQAERQRIL

BLAST against CATH

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Domain History Events (12)

Domain assigned by auto on 01 Nov 2006 22:17

Assigning to "3.40.50.1390" based on similarity with "2rslA00"

Flow stage update by auto on 01 Nov 2006 21:57

No in_process hits for Domain "2gm5B00" ready to be processed

Update comment by auto on 01 Nov 2006 18:05

Domain "2gm5B00" hits Domain "2gm5D00" (97.5409836065574% over 87.7697841726619%) which is currently in process