CATH Domain: 2gliA04 XML data for domain: 2gliA04

Molscript image for 2gliA04
2gliA04
PDB coordinates for domain 2gliA04

PDB 2gli, Chain A, Domain 4

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.6
3.30.160.60.6.1
3.30.160.60.6.1.1
3.30.160.60.6.1.1.1
3.30.160.60.6.1.1.1.1

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Segment boundaries for domain 2gliA04

Chopping figure for domain 2gliA04
DomainStart PDB ResidueStop PDB Residue
2gliA01 103 135
2gliA02 136 167
2gliA03 168 197
2gliA04 198 228
2gliA05 229 257

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 3.30.160.60.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tf6A04 90.32 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 33 96 1.50 1.55
1ubdC02 89.20 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 27 33 87 1.16 1.33
1x5wA01 88.46 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 28 87 1.20 1.38
1ubdC01 88.39 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 28 39 90 1.32 1.46
1tf6A03 88.39 Xenopus laevisTranscription factor IIIA 3.30.160.60 34 32 91 1.62 1.78
1ubdC04 88.05 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 29 27 90 1.59 1.76
2drpA02 87.92 Brain morphogenesisChromatin bindingDorsal appendage formationDrosophila melanogasterPeripheral nervous system development 3.30.160.60 29 27 87 1.63 1.87
1un6D02 87.55 Xenopus laevisTranscription factor IIIA 3.30.160.60 31 22 96 2.23 2.30
1tf6A02 86.90 Xenopus laevisTranscription factor IIIA 3.30.160.60 29 31 90 1.96 2.17
1bboA02 86.37 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 22 93 2.97 3.17
1tf6D01 86.28 Xenopus laevisTranscription factor IIIA 3.30.160.60 33 19 87 1.94 2.21
2drpA01 85.63 Brain morphogenesisDorsal appendage formationChromatin bindingDrosophila melanogasterPeripheral nervous system development 3.30.160.60 34 22 82 1.57 1.91
2adrA01 85.11 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 20 93 2.32 2.48
1tf3A01 84.85 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 20 93 2.59 2.77
1pjqA02 81.07 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 16 80 2.38 2.98
1kyqA02 80.86 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 16 75 1.98 2.62
2r1fA03 80.66 Escherichia coli K-12UPF0755 protein yceG 3.30.160.60 39 12 79 3.46 4.35
1llmD02 77.64 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 22 50 1.69 3.32
1bbgA00 77.56 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 9 62 1.84 2.94
1ncsA00 76.19 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 22 65 2.15 3.26
1yuiA00 75.33 Drosophila melanogasterPositive regulation of transcription, DNA-dependentTranscription factor GAGACentromeric heterochromatinProtein heterodimerization activity 3.30.160.60 54 16 53 1.79 3.33
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2gliA04
KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2gliA04
KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"