CATH Domain: 2gliA02 XML data for domain: 2gliA02

Molscript image for 2gliA02
2gliA02
PDB coordinates for domain 2gliA02

PDB 2gli, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.5
3.30.160.60.5.2
3.30.160.60.5.2.1
3.30.160.60.5.2.1.1
3.30.160.60.5.2.1.1.1

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Segment boundaries for domain 2gliA02

Chopping figure for domain 2gliA02
DomainStart PDB ResidueStop PDB Residue
2gliA01 103 135
2gliA02 136 167
2gliA03 168 197
2gliA04 198 228
2gliA05 229 257

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 3.30.160.60.5.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tf6A04 88.90 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 23 87 1.67 1.90
1un6D02 88.13 Xenopus laevisTranscription factor IIIA 3.30.160.60 31 19 87 1.77 2.01
1tf6D01 87.44 Xenopus laevisTranscription factor IIIA 3.30.160.60 33 15 84 1.37 1.61
1tf6A03 86.53 Xenopus laevisTranscription factor IIIA 3.30.160.60 34 24 91 2.26 2.48
1ubdC04 86.49 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 29 31 81 1.40 1.71
1ubdC01 86.49 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 28 21 84 1.75 2.06
2drpA01 86.35 Brain morphogenesisDorsal appendage formationChromatin bindingDrosophila melanogasterPeripheral nervous system development 3.30.160.60 34 15 79 1.65 2.08
2drpA02 86.20 Brain morphogenesisChromatin bindingDorsal appendage formationDrosophila melanogasterPeripheral nervous system development 3.30.160.60 29 20 78 1.52 1.93
1ubdC02 86.14 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 27 22 78 1.44 1.83
2gliA04 85.34 Positive regulation of transcription from RNA polymerase II promoterPositive regulation of DNA replicationEpidermal cell differentiationCytosolRegulation of smoothened signaling pathway 3.30.160.60 31 25 90 2.10 2.31
1tf3A01 85.20 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 16 84 1.90 2.24
1tf6A02 85.19 Xenopus laevisTranscription factor IIIA 3.30.160.60 29 24 81 1.64 2.00
1x5wA01 84.64 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 25 78 1.76 2.23
2adrA01 84.37 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 31 84 1.82 2.15
1bboA02 83.32 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 19 84 2.99 3.52
3bidA01 79.11 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 12 63 1.91 3.03
1llmD02 77.23 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 18 56 2.13 3.78
1yuiA00 77.13 Drosophila melanogasterPositive regulation of transcription, DNA-dependentTranscription factor GAGACentromeric heterochromatinProtein heterodimerization activity 3.30.160.60 54 15 57 1.99 3.47
1ncsA00 76.91 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 21 63 2.01 3.15
1kyqA02 76.44 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 3 81 3.38 4.17
1h1jS00 74.51 Identical protein bindingTranscription, DNA-dependentNucleusRNA bindingDouble-stranded DNA binding 1.10.720.30 44 6 72 2.81 3.86
1bbgA00 74.38 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 9 60 2.30 3.83
2r1fA03 72.59 Escherichia coli K-12UPF0755 protein yceG 3.30.160.60 39 6 82 3.94 4.80
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Displaying entries 1 to 23 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2gliA02
EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2gliA02
EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"