Domain assigned by cuff on 14 Feb 2008 11:21
same superfamily
| CATH Code | Level Description | Links |
|---|---|---|
2
| Mainly Beta | |
2.120
| 6 Propellor | |
2.120.10
| Neuraminidase | |
2.120.10.30
| TolB, C-terminal domain | Gene3D |
2.120.10.30.3
| ||
2.120.10.30.3.1
| ||
2.120.10.30.3.1.1
| ||
2.120.10.30.3.1.1.1
| ||
2.120.10.30.3.1.1.1.1
|
There are 2 matching structural neighberhood comparisons for CATH ID 2.120.10.30.3.1.1.1.1 (SIMAX score < 5)
| Match Depth | Match | SSAP score | Match Keywords | Match Superfamily | Length | Sequence Id | Overlap | RMSD | SIMAX |
|---|---|---|---|---|---|---|---|---|---|
![]() |
2p4oA01 | 81.44 | 2.120.10.30 | 285 | 16 | 90 | 2.90 | 3.20 | |
![]() |
1npeA00 | 75.99 | 2.120.10.30 | 263 | 9 | 80 | 3.57 | 4.43 |
>pdb|2ghsA00 LATVFPFAGRVLDETPLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFGSALAKISDSKQLIASDDGLFL RDTATGVLTLHAELESDLPGNRSNDGRHPSGALWIGTGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYF VDTKVNRLRVPLDARTGLPTGKAEVFIDSTGIKGGDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPA FIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGIEVKGRFEPLYRL
>pdb|2ghsA00 LATVFPFAGRVLDETPXLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFXGSALAKISDSKQLIASDDGL FLRDTATGVLTLHAELESDLPGNRSNDGRXHPSGALWIGTXGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGT TGYFVDTKVNRLXRVPLDARTGLPTGKAEVFIDSTGIKGGXDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGK QTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGIEVKGRFEPLYRL
same superfamily
same superfamily. SCOP agrees
same fold group fpr sure. almost certainly same superfamily
Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 177 results for 2ghsA00
The query's function is unknown. Very similar linkage and structure.
SSAP= 82, OV= 84, Seq sim= 19. Very similar linkage.
SSAP= 82, OV= 84, Seq sim= 19. Very similar linkage.
SSAP= 82, OV= 84, Seq sim= 19. Very similar linkage.
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
User 'tronnberg' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Domain "2ghsA00" SCOP scan with no results - no SCOP mapping
Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2ghsA00
Retrieved PRC_PFAMCATH results for job ID SID0293451749683024 and results inserted.
PRC_PFAMCATH job SID0293451749683024 is not yet finished.
The entry "2ghsA00" has been submitted to the PRC_PFAMCATH webservice.
The entry "2ghsA00" has been submitted to the PRC_PFAMCATH webservice.
Retrieved SSAP results for job ID SID6273194194511616 and results inserted.
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 70 results for 2ghsA00
SSAP job SID6273194194511616 is not yet finished.
The entry "2ghsA00" has been submitted to the SSAP webservice.
The entry "2ghsA00" has been submitted to the SSAP webservice.
Giving up on SSAP job SID6386824604422720 because submission time of Tue Aug 21 17:58:21 2007 is more than 172800 seconds older than current time (Thu Aug 23 19:30:28 2007).
SSAP job SID6386824604422720 is not yet finished.
The entry "2ghsA00" has been submitted to the SSAP webservice.
The entry "2ghsA00" has been submitted to the SSAP webservice.
Giving up on SSAP job SID9986523934337152 because submission time of Sun Aug 19 07:11:07 2007 is more than 172800 seconds older than current time (Tue Aug 21 11:02:53 2007).
SSAP job SID9986523934337152 is not yet finished.
The entry "2ghsA00" has been submitted to the SSAP webservice.
The entry "2ghsA00" has been submitted to the SSAP webservice.
Giving up on SSAP job SID8083313294573504 because submission time of Thu Aug 16 23:07:26 2007 is more than 172800 seconds older than current time (Sun Aug 19 03:14:44 2007).
SSAP job SID8083313294573504 is not yet finished.
The entry "2ghsA00" has been submitted to the SSAP webservice.
The entry "2ghsA00" has been submitted to the SSAP webservice.
Giving up on SSAP job SID2195940340167040 because submission time of Tue Aug 14 08:34:26 2007 is more than 172800 seconds older than current time (Thu Aug 16 18:13:16 2007).
SSAP job SID2195940340167040 is not yet finished.
The entry "2ghsA00" has been submitted to the SSAP webservice.
The entry "2ghsA00" has been submitted to the SSAP webservice.
Retrieved PRC results for job ID SID1247217392760105 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 37 results for 2ghsA00
The entry "2ghsA00" has been submitted to the PRC webservice.
The entry "2ghsA00" has been submitted to the PRC webservice.
Retrieved HMM(SAM) results for job ID SID7997239578544608 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 11 results for 2ghsA00
HMM(SAM) job SID7997239578544608 is not yet finished.
The entry "2ghsA00" has been submitted to the HMM (SAM) webservice.
The entry "2ghsA00" has been submitted to the HMM (SAM) webservice.
Retrieved "2ghsA00" CATHEDRAL results for job ID SID6837350348485888 and inserted them into the database.
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 53 results for 2ghsA00
"2ghsA00" CATHEDRAL job SID6837350348485888 is not yet finished.
The entry "2ghsA00" has been submitted to the CATHEDRAL webservice.
The entry "2ghsA00" has been submitted to the CATHEDRAL webservice.
ScanList with 9778 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2ghsA00.scanlist" for "2ghsA00"
Writing ScanList containing 9778 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2ghsA00.scanlist" for domain "2ghsA00"
Waiting for 984 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
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Waiting for 556 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Waiting for 548 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Waiting for 536 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Waiting for 517 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Waiting for 483 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Waiting for 439 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Waiting for 101 new domains (example : 2a9vD00) to be processed so that they can be scanned against too.
Waiting for 100 new domains (example : 2a9vD00) to be processed so that they can be scanned against too.
Waiting for 111 new domains (example : 2a9vD00) to be processed so that they can be scanned against too.
No satisfactory AssignClose result found.
No in_process hits for Domain "2ghsA00" ready to be processed
NW result present for Domain "2ghsA00"
All required files are present for Domain "2ghsA00"
Beginning processing for Domain "2ghsA00"
checked chopping