CATH Domain: 2gf3A01 XML data for domain: 2gf3A01

Molscript image for 2gf3A01
2gf3A01
PDB coordinates for domain 2gf3A01

PDB 2gf3, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.50 3-Layer(bba) Sandwich
3.50.50 FAD/NAD(P)-binding domain
3.50.50.60 Gene3D
3.50.50.60.4
3.50.50.60.4.1
3.50.50.60.4.1.1
3.50.50.60.4.1.1.1
3.50.50.60.4.1.1.1.1

Segment boundaries for domain 2gf3A01

Chopping figure for domain 2gf3A01
DomainStart PDB ResidueStop PDB Residue
2gf3A01 1 59
2gf3A01 149 212
2gf3A01 326 385
2gf3A02 60 145
2gf3A02 213 321

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.50.50.60.4.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ryiA01 85.97 Glycine oxidase [EC:1.4.3.19]Thiamine metabolismBacillus subtilisGlycine oxidase 3.50.50.60 224 25 77 1.82 2.34
1pj5A01 82.95 N,N-dimethylglycine oxidaseArthrobacter globiformis 3.50.50.60 240 19 74 2.82 3.80
2iidA02 82.18 Calloselasma rhodostomaL-amino-acid oxidase 3.50.50.60 148 17 67 3.19 4.71
3c4nA01 81.02 Deinococcus radioduransPutative uncharacterized protein 3.50.50.60 233 15 65 2.42 3.69
3kkjA01 80.91 Pseudomonas syringae pv. tomatoAmine oxidase, flavin-containing protein 3.50.50.60 150 12 73 3.10 4.23
1m6iA01 80.85 DNA damage response, signal transduction resulting in induction of apoptosisNucleusApoptosis-inducing factor 1, mitochondrialHomo sapiensDNA fragmentation involved in apoptotic nuclear change 3.50.50.60 165 14 70 3.05 4.33
1vg0A01 80.48 Rattus norvegicusRab GTPase bindingRab proteins geranylgeranyltransferase component A 1 3.50.50.60 205 13 71 3.38 4.71
2gqfA01 78.39 Haemophilus influenzaeUncharacterized protein HI_0933 3.50.50.60 244 13 64 3.05 4.71
Displaying entries 1 to 8 (page 1 of 1)


Domain ATOM Sequence

>pdb|2gf3A01
STHFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGRSENCIRAYRELAEARGAKVLT
HTRVEDFDISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLAL
TGKTEHDISIFSINRPALKESLQ    

Domain COMBS Sequence

>pdb|2gf3A01
STHFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGRSENCIRAYRELAEARGAKVLT
HTRVEDFDISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLAL
TGKTEHDISIFSINRPALKESLQKTTI    

Domain History Events (7)

Domain assigned by auto on 14 Aug 2007 23:10

Assigning to "3.50.50.60" based on similarity with "2gf3B01"

Flow stage update by auto on 14 Aug 2007 22:49

No in_process hits for Domain "2gf3A01" ready to be processed

Flow stage update by auto on 26 Jul 2007 15:20

Domain "2gf3A01" hits Domain "2gf3B01" (100% over 100%) which is currently in process

Flow stage update by auto on 26 Jul 2007 15:20

NW result present for Domain "2gf3A01"

Flow stage update by auto on 16 Jul 2007 22:38

All required files are present for Domain "2gf3A01"

Flow stage update by auto on 14 Jul 2007 06:01

Beginning processing for Domain "2gf3A01"

Insertion by auto on 14 Jul 2007 04:38

Final ChopClose added based on similarity with "1el5A"