CATH Domain: 2g3rA01 XML data for domain: 2g3rA01

Molscript image for 2g3rA01
2g3rA01
PDB coordinates for domain 2g3rA01

PDB 2g3r, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.140 Gene3D
2.30.30.140.1
2.30.30.140.1.1
2.30.30.140.1.1.1
2.30.30.140.1.1.1.1
2.30.30.140.1.1.1.1.1

[top]
Segment boundaries for domain 2g3rA01

Chopping figure for domain 2g3rA01
DomainStart PDB ResidueStop PDB Residue
2g3rA01 1485 1538
2g3rA02 1539 1603

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 2.30.30.140.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1mhnA00 88.53 Survival motor neuron proteinSurvival motor neuron proteinHomo sapiensProtein binding 2.30.30.140 59 20 88 1.58 1.79
1sf9A02 86.06 Bacillus subtilisUncharacterized protein yfhH 2.30.30.340 54 5 85 2.18 2.56
1igqB00 84.92 Escherichia coliTranscriptional repressor protein korB 2.30.30.150 57 18 84 3.96 4.70
1khcA01 84.86 Protein complex localizationRegulation of gene expression by genetic imprintingDNA (cytosine-5)-methyltransferase 3BChromosome, centromeric regionProtein binding 2.30.30.160 65 9 75 1.86 2.47
1mmdA01 83.87 ActomyosinMyosin II complexActin-myosin filament slidingProtein localizationActin filament binding 2.30.30.360 48 12 84 2.58 3.04
1irxA02 82.20 Aminoacyl-tRNA biosynthesisLysyl-tRNA synthetase, class I [EC:6.1.1.6]Pyrococcus horikoshiiLysyl-tRNA synthetase 2.30.30.300 43 16 81 2.78 3.43
2hqxA01 82.16 Staphylococcal nuclease domain-containing protein 1NucleusGolgi apparatusTranscription cofactor activityHomo sapiens 2.30.30.140 81 15 64 1.65 2.57
1ib8A02 79.51 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 11 74 2.62 3.51
3f70B02 77.14 CytoplasmMethylated histone residue bindingLethal(3)malignant brain tumor-like protein 2Homo sapiens 2.30.30.160 88 18 57 2.28 3.93
1n27A00 75.98 Mus musculusCytoplasmHepatoma-derived growth factor-related protein 3Nucleus 2.30.30.160 96 20 55 2.65 4.80
1tovA00 75.83 Caenorhabditis elegansTubulin-specific chaperone B 2.30.30.190 97 16 54 2.46 4.50
3f70A03 75.29 CytoplasmMethylated histone residue bindingLethal(3)malignant brain tumor-like protein 2Homo sapiens 2.30.30.160 101 11 50 2.36 4.67
1oz2A02 75.10 SAM domain bindingRegulation of mitosisIdentical protein bindingChromatin modificationHemopoiesis 2.30.30.160 104 11 49 2.14 4.36
1oz2A03 74.05 Regulation of mitosisIdentical protein bindingSAM domain bindingChromatin modificationHemopoiesis 2.30.30.160 108 18 47 2.28 4.83
1oz2A01 73.59 Regulation of mitosisIdentical protein bindingSAM domain bindingMethylated histone residue bindingHemopoiesis 2.30.30.160 112 16 46 2.30 4.95
[1]
Displaying entries 1 to 15 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|2g3rA01
SFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPI
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|2g3rA01
GHMNSFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPI
BLAST against CATH

[top]
Domain History Events (6)

Domain assigned by auto on 12 Jan 2007 23:36

Assigning to "2.30.30.140" based on similarity with "2ig0A01"

Flow stage update by auto on 12 Jan 2007 23:32

No in_process hits for Domain "2g3rA01" ready to be processed

Flow stage update by auto on 12 Jan 2007 23:32

NW result present for Domain "2g3rA01"

Flow stage update by auto on 11 Jan 2007 19:33

All required files are present for Domain "2g3rA01"

Flow stage update by auto on 10 Jan 2007 19:35

Beginning processing for Domain "2g3rA01"

Insertion by auto on 10 Jan 2007 19:24

Final ChopClose added based on similarity with "2ig0A"