CATH Domain: 2fp4B03 XML data for domain: 2fp4B03

Molscript image for 2fp4B03
2fp4B03
PDB coordinates for domain 2fp4B03

PDB 2fp4, Chain B, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.261 Gene3D
3.40.50.261.2
3.40.50.261.2.1
3.40.50.261.2.1.1
3.40.50.261.2.1.1.1
3.40.50.261.2.1.1.1.1

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Segment boundaries for domain 2fp4B03

Chopping figure for domain 2fp4B03
DomainStart PDB ResidueStop PDB Residue
2fp4B01 1 20
2fp4B01 112 246
2fp4B02 21 111
2fp4B03 247 392

Structural Neighbourhood (45 entries)

There are 45 matching structural neighberhood comparisons for CATH ID 3.40.50.261.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 45 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2fvyA01 79.54 Bacterial chemotaxisABC transportersMethyl-galactoside transport system substrate-binding proteinD-galactose-binding periplasmic proteinEscherichia coli K-12 3.40.50.2300 147 9 76 2.92 3.83
1jyeA01 79.31 Lactose operon repressorProtein bindingEscherichia coli K-12Cytosol 3.40.50.2300 130 9 72 2.68 3.69
2fepA01 79.11 Bacillus subtilisCatabolite control protein ALacI family transcriptional regulator 3.40.50.2300 133 6 73 2.70 3.68
1jflA01 79.05 Aspartate racemase [EC:5.1.1.13]228aa long hypothetical aspartate racemasePyrococcus horikoshiiAlanine, aspartate and glutamate metabolism 3.40.50.1860 119 9 65 2.66 4.05
2driA01 78.51 Bacterial chemotaxisABC transportersD-ribose-binding periplasmic proteinRibose transport system substrate-binding proteinMembrane 3.40.50.2300 125 12 74 3.15 4.22
1dbqA01 77.96 LacI family transcriptional regulator, purine nucleotide synthesis repressorHTH-type transcriptional repressor purREscherichia coli K-12 3.40.50.2300 134 9 73 2.92 3.98
3ctpA01 77.95 Alkaliphilus metalliredigens QYMFPeriplasmic binding protein/LacI transcriptional regulator 3.40.50.2300 128 7 69 2.98 4.27
2h3hA01 77.92 Thermotoga maritimaSugar ABC transporter, periplasmic sugar-binding proteinSimple sugar transport system substrate-binding protein 3.40.50.2300 148 6 74 3.13 4.21
3bilA01 77.76 Corynebacterium glutamicumPROBABLE LACI-FAMILY TRANSCRIPTIONAL REGULATOR 3.40.50.2300 120 13 71 3.38 4.75
3brqB01 77.73 Negative regulation of gene-specific transcriptionEscherichia coli K-12Specific transcriptional repressor activityHTH-type transcriptional regulator ascGSequence-specific DNA binding transcription factor activity 3.40.50.2300 127 8 71 3.53 4.91
2qu7A01 77.52 Putative transcriptional regulatorStaphylococcus saprophyticus subsp. saprophyticus ATCC 15305 3.40.50.2300 129 11 72 3.27 4.50
8abpA01 77.46 ABC transportersL-arabinose-binding periplasmic proteinL-arabinose transport system substrate-binding proteinEscherichia coli K-12 3.40.50.2300 138 7 78 3.86 4.94
2hqbA01 77.43 Transcriptional activator of comK geneTranscriptional activator of comK geneBacillus halodurans 3.40.50.2300 130 10 71 3.13 4.35
1srrC00 77.43 Sporulation initiation phosphotransferase FTwo-component system, response regulator, stage 0 sporulation protein FBacillus subtilisTwo-component system 3.40.50.2300 121 6 74 3.55 4.76
3c3kB01 77.40 Actinobacillus succinogenes 130ZAlanine racemase 3.40.50.2300 134 8 73 3.26 4.45
3kuuD00 77.27 Purine metabolismMetabolic pathwaysPhosphoribosylaminoimidazole carboxylase catalytic subunit PurE5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]Yersinia pestis 3.40.50.7700 150 9 77 3.49 4.51
3gt7A00 77.03 Sensor proteinSyntrophus aciditrophicus SB 3.40.50.2300 131 7 77 3.53 4.56
1gudA01 77.02 ABC transportersMembraneD-allose transport system substrate-binding proteinD-allose-binding periplasmic proteinEscherichia coli K-12 3.40.50.2300 139 10 78 3.55 4.51
3d8uB01 76.99 Putative transcriptional regulatorVibrio parahaemolyticusLacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 3.40.50.2300 119 8 70 3.35 4.75
1ys7A01 76.92 Transcriptional regulatory protein prrAMycobacterium tuberculosis 3.40.50.2300 122 11 78 3.82 4.89
2r25B00 76.80 MAPK signaling pathway - yeastResponse to hydrogen peroxideProtein bindingOsmosensor activityOsomolarity two-component system, sensor histidine kinase SLN1 [EC:2.7.13.3] 3.40.50.2300 131 8 80 4.00 4.95
1zgzA00 76.80 Two-component systemTorCAD operon transcriptional regulatory protein torRTwo-component system, OmpR family, torCAD operon response regulator TorRProtein bindingEscherichia coli K-12 3.40.50.2300 118 6 75 3.64 4.83
2qv0A00 76.77 Protein mrkEKlebsiella pneumoniae 3.40.50.2300 122 8 75 3.73 4.95
3gl9B00 76.67 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulatorProtein binding 3.40.50.2300 118 9 76 3.79 4.99
1qkkA00 76.48 Sinorhizobium melilotiTwo-component systemTwo-component system, NtrC family, C4-dicarboxylate transport response regulator DctDC4-dicarboxylate transport transcriptional regulatory protein dctD 3.40.50.2300 139 5 76 3.55 4.67
1bykA01 76.48 Specific transcriptional repressor activityLacI family transcriptional regulator, trehalose operon repressorSequence-specific DNA binding transcription factor activityTranscriptionHTH-type transcriptional regulator treR 3.40.50.2300 138 9 71 3.27 4.59
3cnbA00 76.45 DNA-binding response regulator, merR familyColwellia psychrerythraea 34H 3.40.50.2300 124 6 76 3.56 4.68
1dbwB00 76.32 Sinorhizobium melilotiTranscriptional regulatory protein fixJ 3.40.50.2300 125 5 77 3.76 4.86
2jk1A00 76.30 Hydrogenase transcriptional regulatory protein hupR1Rhodobacter capsulatus 3.40.50.2300 138 6 77 3.83 4.95
1mb3A00 76.28 Caulobacter vibrioidesTwo-component systemTwo-component system, cell cycle response regulator DivKPolar differentiation response regulatorCell cycle - Caulobacter 3.40.50.2300 115 8 72 3.28 4.52
2jbaA00 76.22 Two-component systemPhosphate regulon transcriptional regulatory protein phoBTwo-component system, OmpR family, phosphate regulon response regulator PhoBProtein bindingEscherichia coli K-12 3.40.50.2300 125 12 78 3.80 4.87
3cz5B00 76.10 Two-component response regulator, LuxR familyAurantimonas manganoxydans SI85-9A1 3.40.50.2300 140 5 79 3.87 4.87
3bulA02 76.09 One carbon pool by folateMetabolic pathwaysCysteine and methionine metabolismEscherichia coli K-12Methionine synthase activity 3.40.50.280 153 6 79 3.27 4.10
1wcwA01 76.01 Thermus thermophilus HB8Uroporphyrinogen-III synthase [EC:4.2.1.75]Probable uroporphyrinogen-III synthasePorphyrin and chlorophyll metabolismMetabolic pathways 3.40.50.10090 125 12 75 3.75 4.98
3clkB01 75.70 Lactobacillus plantarumTranscription regulator 3.40.50.2300 119 13 64 2.96 4.60
2p62A01 75.57 Pyrococcus horikoshiiPutative uncharacterized protein PH0156 3.40.50.10620 148 9 68 3.17 4.65
2qzjA00 75.46 Two-component response regulatorClostridium difficile 630 3.40.50.2300 119 10 76 3.77 4.91
2qsjB00 75.42 DNA-binding response regulator, LuxR familyRuegeria pomeroyi 3.40.50.2300 122 9 74 3.21 4.30
1ccwA00 75.18 Methylaspartate mutase S chainClostridium cochlearium 3.40.50.280 137 9 78 3.55 4.51
1yl5A01 75.10 Metabolic pathwaysLysine biosynthesisDihydrodipicolinate reductase [EC:1.3.1.26]Dihydrodipicolinate reductaseMycobacterium tuberculosis 3.40.50.720 140 7 71 3.32 4.66
3lftB01 75.03 Putative ABC transport system substrate-binding proteinStreptococcus pneumoniaePutative uncharacterized protein 3.40.50.2300 134 8 69 3.27 4.68
1dxyA01 74.67 Lactobacillus paracaseiD-2-hydroxyisocaproate dehydrogenase 3.40.50.720 133 5 70 3.15 4.47
3eq2B01 74.65 Pseudomonas aeruginosaProbable two-component response regulator 3.40.50.2300 103 5 69 3.47 4.97
3cu5B00 74.58 Clostridium phytofermentans ISDgTwo component transcriptional regulator, AraC family 3.40.50.2300 129 6 77 3.81 4.92
1gdhA01 73.80 Glycerate dehydrogenaseHyphomicrobium methylovorum 3.40.50.720 128 7 69 3.29 4.71
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Displaying entries 1 to 45 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2fp4B03
PIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIF
GGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2fp4B03
PIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIF
GGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 22:05

Assigning to "3.40.50.261" based on similarity with "1eucB03" (NWSI: 99.3288590604027, NWO: 100, SPS: 95.17, SPO: 99, RMSD: 1.09)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "2fp4B03"

Flow stage update by auto on 28 Apr 2006 17:49

All required files are present for Domain "2fp4B03"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2fp4B03"

Insertion by auto on 17 Mar 2006 20:56

Final ChopClose added based on similarity with "1eucB" [LEE: 0, LME: 0, MR: 0, LG: 2, SS: 90.98, SI: 99.4936708860759, SO: 99.7474747474748]