CATH Domain: 2f9sB00 XML data for domain: 2f9sB00

Molscript image for 2f9sB00
2f9sB00
PDB coordinates for domain 2f9sB00

PDB 2f9s, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.30 Glutaredoxin
3.40.30.10 Glutaredoxin Gene3D
3.40.30.10.15
3.40.30.10.15.1
3.40.30.10.15.1.1
3.40.30.10.15.1.1.1
3.40.30.10.15.1.1.1.1

Segment boundaries for domain 2f9sB00

Chopping figure for domain 2f9sB00
DomainStart PDB ResidueStop PDB Residue
2f9sB00 40 175

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 3.40.30.10.15.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kngA00 86.90 Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbEBradyrhizobium japonicumThiol:disulfide interchange protein cycY 3.40.30.10 144 25 88 2.02 2.27
3eytB00 85.44 Ruegeria pomeroyiPutative uncharacterized protein 3.40.30.10 147 20 86 2.35 2.72
3fw2A00 84.85 Bacteroides thetaiotaomicronPossible thiol-disulfide oxidoreductase 3.40.30.10 147 22 88 2.53 2.86
1prxB01 84.25 Methane metabolismPhenylalanine metabolismMetabolic pathwaysPhospholipid catabolic processNucleus 3.40.30.10 148 18 79 2.27 2.87
3ewlB00 84.19 Bacteroides fragilis NCTC 9343Putative uncharacterized protein 3.40.30.10 131 18 93 2.82 3.03
2e0qA00 82.97 Sulfolobus tokodaii140aa long hypothetical thioredoxinThioredoxin 1 3.40.30.10 104 20 75 2.98 3.95
2hyxA01 82.87 Mycobacterium tuberculosisProtein dipZ 3.40.30.10 201 23 64 1.94 3.00
2c0dA00 82.73 Peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]Thioredoxin peroxidase 2Plasmodium falciparum 3.40.30.10 168 21 76 2.32 3.02
2b7kA00 82.49 Protein SCO1, mitochondrialCopper ion bindingMitochondrial inner membraneSaccharomyces cerevisiaeCopper ion transport 3.40.30.10 155 17 83 2.71 3.23
3eurA00 82.41 Bacteroides fragilis NCTC 9343Putative uncharacterized protein 3.40.30.10 132 11 91 3.19 3.48
1jfuA00 82.17 Bradyrhizobium japonicumThiol:disulfide interchange protein tlpA 3.40.30.10 176 26 73 1.87 2.55
1v98A00 82.12 Thermus thermophilus HB8Thioredoxin 2 [EC:1.8.1.8]Thioredoxin 3.40.30.10 92 20 66 2.21 3.30
1yexC00 82.07 Peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]Salmonella enterica subsp. enterica serovar TyphimuriumAlkyl hydroperoxide reductase subunit C 3.40.30.10 163 13 77 2.45 3.14
1o8xA00 81.45 TryparedoxinCrithidia fasciculata 3.40.30.10 143 18 90 4.19 4.64
2bmxA00 80.66 Peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]Alkyl hydroperoxide reductase subunit CMycobacterium tuberculosis 3.40.30.10 168 16 76 2.73 3.58
2pn8H00 80.43 Peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]Thioredoxin peroxidase activityHomo sapiensI-kappaB phosphorylationPeroxiredoxin-4 3.40.30.10 189 19 67 3.01 4.44
1nm3A01 80.35 Peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]Haemophilus influenzaeHybrid peroxiredoxin hyPrx5 3.40.30.10 153 16 79 2.82 3.57
1hd2A00 80.00 PeroxisomePeroxiredoxin-5, mitochondrialPeroxiredoxin 5, atypical 2-Cys peroxiredoxin [EC:1.11.1.15]Cellular response to reactive oxygen speciesCytosolic part 3.40.30.10 161 13 77 2.65 3.44
2f8aB00 79.73 Heart contractionRegulation of gene expression, epigeneticGlutathione peroxidase 1SH3 domain bindingNegative regulation of caspase activity 3.40.30.10 175 10 72 2.60 3.61
1xvqA00 79.12 Probable thiol peroxidaseThiol peroxidase, atypical 2-Cys peroxiredoxin [EC:1.11.1.15]Mycobacterium tuberculosis 3.40.30.10 159 16 76 3.59 4.68
1h75A00 74.80 Glutaredoxin-like protein NrdHGlutaredoxin-like protein nrdHEscherichia coli K-12 3.40.30.10 76 13 53 2.45 4.62
Displaying entries 1 to 21 (page 1 of 1)


Domain ATOM Sequence

>pdb|2f9sB00
SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYANQYKHFKSQGVEIVAVNVGESKIAVHNFKSYGVNF
PVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTTESIHDYNLIKPG    

Domain COMBS Sequence

>pdb|2f9sB00
SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVAVNVGESKIAVHNFXKS
YGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTXTESXIHDYXNLIKPGETSGLEHHHHHH    

Domain History Events (11)

Domain assigned by auto on 01 Nov 2006 18:29

Assigning to "3.40.30.10" based on similarity with "2f9sA00"

Flow stage update by auto on 01 Nov 2006 18:05

No in_process hits for Domain "2f9sB00" ready to be processed

Update comment by auto on 01 Nov 2006 14:28

Domain "2f9sB00" hits Domain "2f9sA00" (96.6887417218543% over 100%) which is currently in process

Update comment by auto on 01 Nov 2006 09:49

Domain "2f9sB00" hits Domain "2f9sA00" (96.6887417218543% over 100%) which is currently in process

Update comment by auto on 01 Nov 2006 05:50

Domain "2f9sB00" hits Domain "2f9sA00" (96.6887417218543% over 100%) which is currently in process

Update comment by auto on 01 Nov 2006 02:09

Domain "2f9sB00" hits Domain "2f9sA00" (96.6887417218543% over 100%) which is currently in process

Flow stage update by auto on 21 Oct 2006 17:22

Domain "2f9sB00" hits Domain "2f9sA00" (96.6887417218543% over 100%) which is currently in process

Flow stage update by auto on 21 Oct 2006 17:22

NW result present for Domain "2f9sB00"

Flow stage update by auto on 16 Oct 2006 16:34

All required files are present for Domain "2f9sB00"

Flow stage update by auto on 16 Oct 2006 05:45

Beginning processing for Domain "2f9sB00"

Insertion by auto on 16 Oct 2006 05:02

Final ChopClose added based on similarity with "1st9A"