CATH Domain: 2f8yB00 XML data for domain: 2f8yB00

Molscript image for 2f8yB00
2f8yB00
PDB coordinates for domain 2f8yB00

PDB 2f8y, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.25 Alpha Horseshoe
1.25.40 Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
1.25.40.20 Gene3D
1.25.40.20.4
1.25.40.20.4.1
1.25.40.20.4.1.1
1.25.40.20.4.1.1.1
1.25.40.20.4.1.1.1.1

Segment boundaries for domain 2f8yB00

Chopping figure for domain 2f8yB00
DomainStart PDB ResidueStop PDB Residue
2f8yB00 1909 2117

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 1.25.40.20.4.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1uohA00 88.32 26S proteasome non-ATPase regulatory subunit 10CytoplasmProteasome regulatory particleActin cytoskeletonHomo sapiens 1.25.40.20 223 24 85 1.58 1.85
2dznA00 86.96 26S proteasome non-ATPase regulatory subunit 10Proteasome regulatory particle assemblyProbable 26S proteasome regulatory subunit p28NucleusSaccharomyces cerevisiae 1.25.40.20 226 21 83 2.05 2.46
1awcB00 86.91 Mus musculusGA-binding protein subunit beta-1 1.25.40.20 153 30 73 1.97 2.69
1k1aA00 86.68 Transcription factor bindingBcl3/NF-kappaB2 complexNegative regulation of apoptosisCytoplasmI-kappaB kinase/NF-kappaB cascade 1.25.40.20 228 24 83 2.24 2.69
1iknD00 85.69 Cytoplasmic sequestering of NF-kappaBNeurotrophin signaling pathwayT cell receptor signaling pathwayApoptosisAdipocytokine signaling pathway 1.25.40.20 215 21 86 2.39 2.76
1n0rA00 84.25 1.25.40.20 126 38 60 1.51 2.50
1ympA00 83.45 Negative regulation of gene-specific transcriptionNeural tube developmentNeurogenic locus notch homolog protein 1Regulation of somitogenesisRegulation of epithelial cell proliferation involved in prostate gland development 1.25.40.20 131 25 62 3.12 4.98
3c5rA00 83.25 BRCA1-associated RING domain protein 1Protein homodimerization activityRNA bindingBRCA1-A complexNegative regulation of apoptosis 1.25.40.20 125 27 59 1.43 2.39
1bi7B00 80.50 Bladder cancerSenescencePathways in cancerNon-small cell lung cancerProtein binding 1.25.40.20 125 28 58 1.97 3.35
1ycsB01 80.37 Induction of apoptosisNF-kappaB bindingNegative regulation of cell cycleHomo sapiensApoptosis-stimulating of p53 protein 2 1.25.40.20 128 17 58 2.01 3.44
3ehrA02 80.27 Osteoclast-stimulating factor 1OssificationIdentical protein bindingHomo sapiensSignal transduction 1.25.40.20 114 25 54 1.64 3.03
1n0qB00 80.11 1.25.40.20 93 39 44 1.12 2.52
Displaying entries 1 to 12 (page 1 of 1)


Domain ATOM Sequence

>pdb|2f8yB00
AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD
LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL
AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY    

Domain COMBS Sequence

>pdb|2f8yB00
GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN
RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET
PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLHG    

Domain History Events (6)

Domain assigned by auto on 28 Nov 2006 18:36

Assigning to "1.25.40.20" based on similarity with "1yyhA00"

Flow stage update by auto on 28 Nov 2006 18:22

No in_process hits for Domain "2f8yB00" ready to be processed

Flow stage update by auto on 28 Nov 2006 18:22

NW result present for Domain "2f8yB00"

Flow stage update by auto on 28 Nov 2006 18:22

All required files are present for Domain "2f8yB00"

Flow stage update by auto on 28 Nov 2006 18:21

Beginning processing for Domain "2f8yB00"

Insertion by cuff on 20 Nov 2006 14:41

good batch of choppings