CATH Domain: 2e6fA01 XML data for domain: 2e6fA01

Molscript image for 2e6fA01
2e6fA01
PDB coordinates for domain 2e6fA01

PDB 2e6f, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.70 Aldolase class I Gene3D
3.20.20.70.5
3.20.20.70.5.1
3.20.20.70.5.1.1
3.20.20.70.5.1.1.1
3.20.20.70.5.1.1.1.1

Segment boundaries for domain 2e6fA01

Chopping figure for domain 2e6fA01
DomainStart PDB ResidueStop PDB Residue
2e6fA01 0 52
2e6fA01 71 195
2e6fA01 222 311
2e6fA02 53 70
2e6fA02 196 221

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 3.20.20.70.5.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gteB05 84.16 Pyrimidine metabolismSus scrofaProtein homodimerization activityDihydropyrimidine dehydrogenase [NADP+]Dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2] 3.20.20.70 306 20 80 2.62 3.26
1ep3A00 83.12 Pyrimidine metabolismDihydroorotate oxidase [EC:1.3.3.1]Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase B, catalytic subunitProtein binding 3.20.20.70 311 24 83 2.86 3.41
1d3gA00 82.46 Pyrimidine metabolismDihydroorotate dehydrogenase, mitochondrialHomo sapiensDihydroorotate dehydrogenase [EC:1.3.5.2]Metabolic pathways 3.20.20.70 360 24 71 1.93 2.70
1n7kA00 78.36 Aeropyrum pernixProbable deoxyribose-phosphate aldolasePentose phosphate pathwayDeoxyribose-phosphate aldolase [EC:4.1.2.4] 3.20.20.70 234 14 75 3.49 4.61
1b3oA00 77.93 Purine metabolismInosine-5'-monophosphate dehydrogenase 2IMP dehydrogenase [EC:1.1.1.205]Protein bindingMetabolic pathways 3.20.20.70 304 11 73 3.17 4.32
1vrdB00 77.88 Purine metabolismMetabolic pathwaysThermotoga maritimaInosine-5'-monophosphate dehydrogenaseIMP dehydrogenase [EC:1.1.1.205] 3.20.20.70 317 14 73 3.06 4.18
1ypfA00 77.52 Purine metabolismBacillus anthracisGMP reductase [EC:1.7.1.7]GMP reductase 3.20.20.70 292 13 77 3.35 4.31
1ub3A00 77.47 Thermus thermophilus HB8Deoxyribose-phosphate aldolasePentose phosphate pathwayDeoxyribose-phosphate aldolase [EC:4.1.2.4] 3.20.20.70 211 14 72 3.18 4.37
1vcvA00 76.64 Pyrobaculum aerophilumProbable deoxyribose-phosphate aldolasePentose phosphate pathwayDeoxyribose-phosphate aldolase [EC:4.1.2.4] 3.20.20.70 226 15 72 3.33 4.62
3f4wA00 74.78 Pentose and glucuronate interconversionsMethane metabolismPutative hexulose 6 phosphate synthaseSalmonella enterica subsp. enterica serovar Typhimurium3-hexulose-6-phosphate synthase [EC:4.1.2.43] 3.20.20.70 211 12 75 3.58 4.77
1m5wA00 74.51 Vitamin B6 metabolismMetabolic pathwaysPyridoxine 5-phosphate synthase [EC:2.6.99.2]Pyridoxine 5'-phosphate synthasePyridoxine biosynthetic process 3.20.20.70 242 7 80 3.92 4.89
1q6oB00 74.31 Ascorbate and aldarate metabolism3-keto-L-gulonate-6-phosphate decarboxylase ulaDMagnesium ion binding3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]3-dehydro-L-gulonate-6-phosphate decarboxylase activity 3.20.20.70 215 10 73 3.47 4.70
Displaying entries 1 to 12 (page 1 of 1)


Domain ATOM Sequence

>pdb|2e6fA01
MCLKLNLLDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGLPNLGFDFYLKYASDLHDYSKKPLFLS
ISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTA
AAVLNEFPLVKFVTCVNSGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFT
RLEDELLEIMARKGYRTLEEFRGRVKTI    

Domain COMBS Sequence

>pdb|2e6fA01
MMCLKLNLLDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGLPNLGFDFYLKYASDLHDYSKKPLFL
SISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDT
AAAVLNEFPLVKFVTCVNSGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIF
TRLEDELLEIMARKGYRTLEEFRGRVKTIE    

Domain History Events (6)

Domain assigned by auto on 19 Jan 2008 17:24

Assigning to "3.20.20.70" based on similarity with "2e6dA01"

Flow stage update by auto on 19 Jan 2008 17:07

No in_process hits for Domain "2e6fA01" ready to be processed

Flow stage update by auto on 19 Jan 2008 17:06

NW result present for Domain "2e6fA01"

Flow stage update by auto on 19 Jan 2008 11:04

All required files are present for Domain "2e6fA01"

Flow stage update by auto on 18 Jan 2008 11:54

Beginning processing for Domain "2e6fA01"

Insertion by auto on 18 Jan 2008 11:09

Final ChopClose added based on similarity with "2e6dA"