CATH Domain: 2e5yA02 XML data for domain: 2e5yA02

Molscript image for 2e5yA02
2e5yA02
PDB coordinates for domain 2e5yA02

PDB 2e5y, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.440 Gene3D
1.20.5.440.3
1.20.5.440.3.1
1.20.5.440.3.1.1
1.20.5.440.3.1.1.1
1.20.5.440.3.1.1.1.1

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Segment boundaries for domain 2e5yA02

Chopping figure for domain 2e5yA02
DomainStart PDB ResidueStop PDB Residue
2e5yA01 1 88
2e5yA02 89 133

Structural Neighbourhood (28 entries)

There are 28 matching structural neighberhood comparisons for CATH ID 1.20.5.440.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 28 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wb7A01 85.40 Superoxide dismutase, Fe-Mn family [EC:1.15.1.1]Sulfolobus solfataricusSuperoxide dismutase [Fe] 1.10.287.990 67 11 67 1.38 2.05
3csxA00 84.65 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 61 11 73 2.05 2.78
1vq8V00 84.33 RibosomeLarge subunit ribosomal protein L29Haloarcula marismortui50S ribosomal protein L29P 1.10.287.310 65 11 67 1.89 2.79
1gaxA05 82.28 Aminoacyl-tRNA biosynthesisValyl-tRNA synthetase [EC:6.1.1.9]Valyl-tRNA synthetaseValine, leucine and isoleucine biosynthesisThermus thermophilus 1.10.287.380 73 20 61 1.39 2.25
1g4yB00 82.03 Rattus norvegicusSmall conductance calcium-activated potassium channel protein 2Small conductance calcium-activated potassium channel activityIntegral to membranePotassium ion transport 1.10.287.70 81 17 55 1.97 3.55
3csxB00 79.77 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 71 11 63 2.36 3.72
2qjyC01 79.50 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 9 53 1.95 3.66
1kqfB03 79.14 Two-component systemMetabolic pathwaysGlyoxylate and dicarboxylate metabolismMethane metabolismFormate dehydrogenase activity 1.20.5.480 44 0 62 3.07 4.93
2gm6A01 78.85 Ralstonia eutropha JMP134Cysteine dioxygenase type I 1.20.5.440 38 13 84 3.96 4.69
1r6tA01 78.47 Soluble fractionTryptophanyl-tRNA synthetase, cytoplasmicProtein bindingAminoacyl-tRNA biosynthesisCytoplasm 1.10.287.10 52 13 75 3.44 4.59
1kv4A00 78.29 Moricin-1Bombyx mori 1.20.5.750 42 7 53 1.22 2.29
1wr6A00 78.15 ADP-ribosylation factor-binding protein GGA3ADP-ribosylation factor bindingHomo sapiensTrans-Golgi network 1.20.58.160 88 4 51 2.06 4.03
1vf5C03 78.15 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 6 48 0.78 1.60
2k9yA00 78.01 ApoptosisIntegral to plasma membraneEphrin type-A receptor 2Homo sapiensEph receptor A2 [EC:2.7.10.1] 1.20.5.510 41 7 73 3.27 4.46
1p49A02 77.90 LysosomeSteryl-sulfataseMicrosomeSteryl-sulfatase [EC:3.1.6.2]Plasma membrane 1.10.287.550 59 4 71 3.14 4.41
1ozhA03 75.78 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 4 46 1.87 4.01
1h8bB00 75.26 TitinOryctolagus cuniculus 1.20.5.510 23 8 48 1.61 3.29
1lvfB00 75.09 Rattus norvegicusSyntaxin-6Syntaxin 6SNARE interactions in vesicular transport 1.20.58.90 104 8 43 2.05 4.74
1ybkA00 74.62 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 4 42 1.73 4.09
1uurA01 74.34 Specific transcriptional repressor activityProtein homodimerization activityTranscription activator activityNucleusSignal transducer and activator of transcription A 1.20.58.240 110 2 40 1.95 4.77
3c8vA04 72.56 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 21 42 1.00 2.37
1omiA02 72.48 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 0 35 0.30 0.84
1k87A01 71.79 Arginine and proline metabolismMetabolic pathwaysAlanine, aspartate and glutamate metabolism1-pyrroline-5-carboxylate dehydrogenase activityBifunctional protein putA 1.20.5.550 52 6 36 0.94 2.57
1d66B02 68.89 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 0 33 0.49 1.47
2qiwA02 68.14 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 5 37 1.80 4.76
2qsiA02 67.42 Putative hydrogenase expression/formation protein hupGHydrogenase-1 operon protein HyaERhodopseudomonas palustris 1.20.5.510 27 11 35 1.54 4.33
1mkmA02 66.38 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 31 0.57 1.83
1onvB00 66.27 CTD phosphatase activityProtein dephosphorylationHomo sapiensRNA polymerase II subunit A C-terminal domain phosphataseDNA-directed RNA polymerase activity 1.20.5.670 21 9 42 2.01 4.76
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Displaying entries 1 to 28 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2e5yA02
DVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMNRLSVAEMK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2e5yA02
DVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMNRLSVAEMK
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 09 Aug 2007 10:47

Assigning to "1.20.5.440" based on similarity with "1bshA02"

Flow stage update by auto on 09 Aug 2007 10:43

No in_process hits for Domain "2e5yA02" ready to be processed

Flow stage update by auto on 09 Aug 2007 10:43

NW result present for Domain "2e5yA02"

Flow stage update by auto on 21 Jul 2007 23:04

All required files are present for Domain "2e5yA02"

Flow stage update by auto on 20 Jul 2007 10:57

Beginning processing for Domain "2e5yA02"

Insertion by auto on 20 Jul 2007 10:08

Final ChopClose added based on similarity with "1aqt0"