CATH Domain: 2drpA01 XML data for domain: 2drpA01

Molscript image for 2drpA01
2drpA01
PDB coordinates for domain 2drpA01

PDB 2drp, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.10
3.30.160.60.10.1
3.30.160.60.10.1.1
3.30.160.60.10.1.1.1
3.30.160.60.10.1.1.1.1

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Segment boundaries for domain 2drpA01

Chopping figure for domain 2drpA01
DomainStart PDB ResidueStop PDB Residue
2drpA01 103 136
2drpA02 137 165

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 3.30.160.60.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ubdC02 89.18 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 27 22 79 1.05 1.32
2drpA02 89.06 Brain morphogenesisChromatin bindingDorsal appendage formationDrosophila melanogasterPeripheral nervous system development 3.30.160.60 29 27 85 1.57 1.84
1tf6A04 88.06 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 20 79 1.26 1.59
1x5wA01 88.05 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 21 82 2.05 2.49
1ubdC01 86.85 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 28 21 76 0.91 1.19
1bboA02 86.72 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 19 85 2.04 2.39
1tf6A03 86.67 Xenopus laevisTranscription factor IIIA 3.30.160.60 34 23 88 2.77 3.14
1tf6D01 86.51 Xenopus laevisTranscription factor IIIA 3.30.160.60 33 15 91 1.97 2.16
1un6D02 86.35 Xenopus laevisTranscription factor IIIA 3.30.160.60 31 25 82 1.25 1.52
1tf6A02 86.08 Xenopus laevisTranscription factor IIIA 3.30.160.60 29 31 79 2.22 2.80
1tf3A01 85.25 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 16 82 1.84 2.23
2adrA01 85.17 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 24 82 1.96 2.38
3bidA01 82.19 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 17 73 2.01 2.72
1pjqA02 81.86 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 0 74 1.69 2.27
1kyqA02 81.85 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 2 70 1.45 2.06
1bbgA00 81.16 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 8 72 2.94 4.06
1ncsA00 80.56 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 17 72 2.00 2.76
1llmD02 79.69 Early growth response protein 1Prion diseasesPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyResponse to insulin stimulusNegative regulation of transcription from RNA polymerase II promoter 3.30.160.60 55 17 49 0.81 1.65
1z1bA01 76.20 Enterobacteria phage lambdaIntegrase 3.30.160.60 57 2 59 2.05 3.44
1b69A00 72.92 Transposase from transposon Tn916Enterococcus faecalis 3.30.160.60 69 8 49 2.23 4.53
3c6mC01 71.26 Spermine synthaseArginine and proline metabolismSpermine synthase [EC:2.5.1.22]Glutathione metabolismMetabolic pathways 3.30.160.110 44 0 63 3.10 4.87
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2drpA01
FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2drpA01
MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:54

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"