CATH Domain: 2dplA01 XML data for domain: 2dplA01

Molscript image for 2dplA01
2dplA01
PDB coordinates for domain 2dplA01

PDB 2dpl, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.8
3.40.50.620.8.1
3.40.50.620.8.1.1
3.40.50.620.8.1.1.1
3.40.50.620.8.1.1.1.1

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Segment boundaries for domain 2dplA01

Chopping figure for domain 2dplA01
DomainStart PDB ResidueStop PDB Residue
2dplA01 1 185
2dplA02 186 308

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.40.50.620.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vl2A01 81.70 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 3.40.50.620 174 18 81 3.52 4.34
1korB01 81.65 Thermus thermophilus HB8Arginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 3.40.50.620 166 16 83 3.67 4.38
1kh1C01 80.17 Thermus thermophilus HB8Arginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 3.40.50.620 136 18 71 3.42 4.75
3h7eA01 77.49 Pyrococcus furiosusN-type ATP pyrophosphatase superfamily 3.40.50.620 133 16 69 3.40 4.89
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2dplA01
MDWGRFVEEKVREIRETVGDSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHY
VDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPLNLKLIEPLRDLYKDEVRELAKFLGLPEK
IYNR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2dplA01
MDWGRFVEEKVREIRETVGDSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHY
VDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDWIESQGKIKSHHNVGGLPEKLNLKLIEP
LRDLYKDEVRELAKFLGLPEKIYNR
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 12 Jul 2007 14:06

Assigning to "3.40.50.620" based on similarity with "2dplB01"

Flow stage update by auto on 12 Jul 2007 14:06

No in_process hits for Domain "2dplA01" ready to be processed

Update comment by auto on 12 Jul 2007 12:19

Domain "2dplA01" hits Domain "2dplB01" (100% over 100%) which is currently in process

Flow stage update by auto on 12 Jul 2007 12:16

Domain "2dplA01" hits Domain "2dplB01" (100% over 100%) which is currently in process

Flow stage update by auto on 12 Jul 2007 12:16

NW result present for Domain "2dplA01"

Flow stage update by auto on 07 Jul 2007 20:00

All required files are present for Domain "2dplA01"

Flow stage update by auto on 06 Jul 2007 14:25

Beginning processing for Domain "2dplA01"

Insertion by auto on 06 Jul 2007 14:02

Final ChopClose added based on similarity with "2dplB"