CATH Domain: 2dkjA02 XML data for domain: 2dkjA02

Molscript image for 2dkjA02
2dkjA02
PDB coordinates for domain 2dkjA02

PDB 2dkj, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.640 Aspartate Aminotransferase; domain 2
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain) Gene3D
3.40.640.10.1
3.40.640.10.1.1
3.40.640.10.1.1.1
3.40.640.10.1.1.1.1
3.40.640.10.1.1.1.1.1

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Segment boundaries for domain 2dkjA02

Chopping figure for domain 2dkjA02
DomainStart PDB ResidueStop PDB Residue
2dkjA01 6 32
2dkjA01 285 407
2dkjA02 33 284

Structural Neighbourhood (37 entries)

There are 37 matching structural neighberhood comparisons for CATH ID 3.40.640.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 37 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jg8A01 82.75 Thermotoga maritimaGlycine, serine and threonine metabolismThreonine aldolaseL-allo-threonine aldolase 3.40.640.10 245 17 87 3.28 3.76
1bs0A02 81.81 Biotin metabolism8-amino-7-oxononanoate synthaseEscherichia coli K12 3.40.640.10 228 15 85 2.85 3.34
1mdoA01 81.31 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferaseTwo-component system - GeneralNucleotide sugars metabolismSalmonella typhimurium 3.40.640.10 226 13 80 3.05 3.77
1p3wA02 81.28 Thiamine metabolismCysteine desulfuraseCysteine desulfuraseEscherichia coli K12Protein binding 3.40.640.10 247 13 88 3.21 3.64
2yrrA02 81.24 Thermus thermophilus HB8Aminotransferase, class V 3.40.640.10 241 15 86 3.43 3.96
1m32A02 81.19 2-aminoethylphosphonate--pyruvate transaminaseAminophosphonate metabolism2-aminoethylphosphonate-pyruvate transaminaseSalmonella typhimurium 3.40.640.10 237 14 84 3.43 4.04
2ogaA01 81.04 Streptomyces venezuelaeTransaminase 3.40.640.10 240 17 83 3.41 4.07
1o4sA02 81.01 Tyrosine metabolismThermotoga maritimaArginine and proline metabolismCysteine metabolismCarbon fixation 3.40.640.10 221 14 78 2.94 3.72
2hufA02 81.00 Alanine glyoxylate aminotransferaseAedes aegypti 3.40.640.10 248 12 86 3.30 3.83
1t3iB02 80.97 Probable cysteine desulfuraseSelenoamino acid metabolismSelenocysteine lyaseSynechocystis sp. PCC 6803 3.40.640.10 258 11 84 3.57 4.23
3b8xA01 80.56 Putative pyridoxamine 5-phosphate-dependent dehydraseEscherichia coli 3.40.640.10 258 14 81 3.26 3.99
3dydA02 80.38 Tyrosine metabolismTyrosine aminotransferasePhenylalanine metabolismTyrosine aminotransferaseNovobiocin biosynthesis 3.40.640.10 244 14 86 3.62 4.18
1d2fA02 80.24 Nitrogen metabolismCysteine metabolismSelenoamino acid metabolismSulfur metabolismMethionine metabolism 3.40.640.10 243 8 86 3.27 3.78
1vefA02 79.96 Thermus thermophilus HB27Acetylornithine aminotransferaseAcetyl-lysine aminotransferaseUrea cycle and metabolism of amino groupsAcetylornithine/acetyl-lysine aminotransferase 3.40.640.10 242 13 86 3.68 4.27
1lc5A02 79.94 Threonine-phosphate decarboxylasePorphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar Paratyphi B str. SPB7Putative uncharacterized protein 3.40.640.10 225 10 82 2.59 3.14
2ez2A02 79.81 Citrobacter freundiiTyrosine phenol-lyase 3.40.640.10 253 15 84 3.16 3.72
1fc4A01 79.78 Glycine, serine and threonine metabolismEscherichia coli O157:H72-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase 3.40.640.10 230 15 84 3.36 3.98
1yizA02 79.53 Aedes aegyptiKynurenine aminotransferase 3.40.640.10 256 12 87 3.51 4.03
1c7nA02 79.53 Treponema denticolaHemolysin 3.40.640.10 225 11 79 3.15 3.95
1xi9A02 79.46 Tyrosine metabolismPyrococcus furiosusCysteine metabolismArginine and proline metabolismCarbon fixation 3.40.640.10 242 14 84 3.15 3.71
1m7yA02 79.37 Malus x domestica1-aminocyclopropane-1-carboxylate synthaseL-vinylglycine deaminase activity1-aminocyclopropane-1-carboxylate synthase activity 3.40.640.10 257 10 82 3.57 4.33
1w23A01 79.19 Phosphoserine aminotransferaseBacillus alcalophilus 3.40.640.10 242 9 85 4.10 4.78
1zodA02 79.16 2,2-dialkylglycine decarboxylaseBurkholderia cepacia 3.40.640.10 264 9 85 3.82 4.48
2gsaA02 79.11 Glutamate-1-semialdehyde 2,1-aminomutasePorphyrin and chlorophyll metabolismGlutamate-1-semialdehyde 2,1-aminomutaseSynechococcus elongatus PCC 6301 3.40.640.10 249 14 84 3.63 4.29
2qmaA03 78.77 Vibrio parahaemolyticusDiaminobutyrate-2-oxoglutarate transaminaseGlycine, serine and threonine metabolismDiaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylase 3.40.640.10 238 11 81 3.30 4.04
1gd9A02 78.68 Tyrosine metabolismArginine and proline metabolismCysteine metabolismPyrococcus horikoshiiCarbon fixation 3.40.640.10 223 11 79 3.35 4.20
2oatA02 78.67 MitochondrionOrnithine aminotransferase, mitochondrial precursorArginine and proline metabolismBiosynthesis of arginineVisual perception 3.40.640.10 250 8 86 3.91 4.50
1svvA01 78.47 Leishmania major strain FriedlinGlycine, serine and threonine metabolismThreonine aldolasePutative uncharacterized protein 3.40.640.10 242 12 85 3.34 3.90
1sffA02 78.30 Valine, leucine and isoleucine degradation4-aminobutyrate aminotransferaseGlutamate metabolismPropanoate metabolismAlanine and aspartate metabolism 3.40.640.10 260 9 86 3.94 4.57
1js3A02 78.23 Tyrosine metabolismSus scrofaAromatic-L-amino-acid decarboxylaseAromatic-L-amino-acid decarboxylaseAlkaloid biosynthesis I 3.40.640.10 286 11 81 2.73 3.37
1fg7A01 78.20 Tyrosine metabolismNovobiocin biosynthesisPhenylalanine, tyrosine and tryptophan biosynthesisHistidine metabolismPhenylalanine metabolism 3.40.640.10 203 15 73 2.45 3.34
1s0aA02 77.71 Biotin metabolismAdenosylmethionine-8-amino-7-oxononanoate aminotransferaseAdenosylmethionine-8-amino-7-oxononanoate aminotransferaseEscherichia coli K12 3.40.640.10 268 10 83 4.11 4.90
1ajsB02 77.00 Tyrosine metabolismArginine and proline metabolismCysteine metabolismSus scrofaAspartate aminotransferase, cytoplasmic 3.40.640.10 278 9 82 3.85 4.67
2q7wA02 76.44 Alanine and aspartate metabolismTyrosine metabolismCysteine metabolismArginine and proline metabolismCarbon fixation 3.40.640.10 243 10 84 4.09 4.86
2hoxA02 76.24 Alliin lyase 1 precursorAllium sativum 3.40.640.10 210 9 72 3.57 4.92
1uu1A02 76.16 Histidinol-phosphate aminotransferaseTyrosine metabolismThermotoga maritimaNovobiocin biosynthesisPhenylalanine, tyrosine and tryptophan biosynthesis 3.40.640.10 203 10 72 3.06 4.21
1c4kA02 76.12 Lactobacillus sp. 30AOrnithine decarboxylase, inducible 3.40.640.10 313 12 73 3.62 4.95
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Displaying entries 1 to 37 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2dkjA02
NFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTL
MGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGA
YLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFF
EALQPEFKEYSR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2dkjA02
NFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTL
MGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGA
YLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFF
EALQPEFKEYSR
BLAST against CATH

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Domain History Events (7)

Domain assigned by auto on 14 Aug 2007 23:11

Assigning to "3.40.640.10" based on similarity with "2dkjB02"

Flow stage update by auto on 14 Aug 2007 22:49

No in_process hits for Domain "2dkjA02" ready to be processed

Flow stage update by auto on 23 Jul 2007 14:39

Domain "2dkjA02" hits Domain "2dkjB02" (100% over 100%) which is currently in process

Flow stage update by auto on 23 Jul 2007 14:39

NW result present for Domain "2dkjA02"

Flow stage update by auto on 16 Jul 2007 22:38

All required files are present for Domain "2dkjA02"

Flow stage update by auto on 14 Jul 2007 06:01

Beginning processing for Domain "2dkjA02"

Insertion by auto on 14 Jul 2007 04:39

Final ChopClose added based on similarity with "2dkjB"