CATH Domain: 2dkjA02 XML data for domain: 2dkjA02

Molscript image for 2dkjA02
2dkjA02
PDB coordinates for domain 2dkjA02

PDB 2dkj, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.640 Aspartate Aminotransferase; domain 2
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain) Gene3D
3.40.640.10.1
3.40.640.10.1.1
3.40.640.10.1.1.1
3.40.640.10.1.1.1.1
3.40.640.10.1.1.1.1.1

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Segment boundaries for domain 2dkjA02

Chopping figure for domain 2dkjA02
DomainStart PDB ResidueStop PDB Residue
2dkjA01 6 32
2dkjA01 285 407
2dkjA02 33 284

Structural Neighbourhood (40 entries)

There are 40 matching structural neighberhood comparisons for CATH ID 3.40.640.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 40 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jg8A01 82.75 Thermotoga maritimaThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysL-allo-threonine aldolase 3.40.640.10 245 17 87 3.28 3.76
1o69A01 82.32 Campylobacter jejuniAminotransferase homolog 3.40.640.10 233 11 85 3.40 3.99
3dr4C01 82.00 Perosamine synthetasePerosamine synthetaseCaulobacter vibrioides 3.40.640.10 236 15 84 3.28 3.90
1bs0A02 81.81 Biotin metabolismMetabolic pathways8-amino-7-oxononanoate synthase [EC:2.3.1.47]8-amino-7-oxononanoate synthase activityBiotin biosynthetic process 3.40.640.10 228 15 85 2.85 3.34
1mdoA01 81.31 Amino sugar and nucleotide sugar metabolismUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseTwo-component systemSalmonella enterica subsp. enterica serovar TyphimuriumUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.-] 3.40.640.10 226 13 80 3.05 3.77
1p3wA02 81.28 Thiamine metabolismCysteine desulfurase activitySelenocysteine lyase activityCysteine desulfuraseIron-sulfur cluster assembly 3.40.640.10 247 13 88 3.21 3.64
2yrrA02 81.24 Thermus thermophilus HB8Aminotransferase, class V 3.40.640.10 241 15 86 3.43 3.96
1m32A02 81.19 2-aminoethylphosphonate--pyruvate transaminaseSalmonella enterica subsp. enterica serovar Typhimurium2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]Phosphonate and phosphinate metabolismMetabolic pathways 3.40.640.10 237 14 84 3.43 4.04
1o4sA02 81.01 Tyrosine metabolismThermotoga maritimaArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Metabolic pathways 3.40.640.10 221 14 78 2.94 3.72
1t3iB02 80.97 Cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]Probable cysteine desulfuraseThiamine metabolismSelenoamino acid metabolismMetabolic pathways 3.40.640.10 258 11 84 3.57 4.23
3b8xA01 80.56 Amino sugar and nucleotide sugar metabolismPutative pyridoxamine 5-phosphate-dependent dehydraseEscherichia coliCDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase 3.40.640.10 258 14 81 3.26 3.99
3dydA02 80.38 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityPhenylalanine metabolismMetabolic pathwaysUbiquinone and other terpenoid-quinone biosynthesis 3.40.640.10 244 14 86 3.62 4.18
1d2fA02 80.24 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.40.640.10 243 8 86 3.27 3.78
1vefA02 79.96 Acetylornithine/acetyl-lysine aminotransferase [EC:2.6.1.11 2.6.1.-]Thermus thermophilus HB27Arginine and proline metabolismAcetylornithine/acetyl-lysine aminotransferaseMetabolic pathways 3.40.640.10 242 13 86 3.68 4.27
1lc5A02 79.94 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumThreonine-phosphate decarboxylaseThreonine-phosphate decarboxylase [EC:4.1.1.81] 3.40.640.10 225 10 82 2.59 3.14
2ez2A02 79.81 Citrobacter freundiiTyrosine phenol-lyase 3.40.640.10 253 15 84 3.16 3.72
1fc4A01 79.78 Glycine, serine and threonine metabolismMetal ion bindingLigase activity2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.40.640.10 230 15 84 3.36 3.98
1yizA02 79.53 Aedes aegyptiKynurenine aminotransferase 3.40.640.10 256 12 87 3.51 4.03
1c7nA02 79.53 Treponema denticolaHemolysin 3.40.640.10 225 11 79 3.15 3.95
1xi9A02 79.46 Pyrococcus furiosusAminotransferase [EC:2.6.1.-]Alanine aminotransferase 3.40.640.10 242 14 84 3.15 3.71
1m7yA02 79.37 Malus x domestica1-aminocyclopropane-1-carboxylate synthase1-aminocyclopropane-1-carboxylate synthase activity 3.40.640.10 257 10 82 3.57 4.33
1zodA02 79.16 2,2-dialkylglycine decarboxylaseBurkholderia cepacia 3.40.640.10 264 9 85 3.82 4.48
1w23A01 79.14 Phosphoserine aminotransferaseBacillus alcalophilus 3.40.640.10 242 9 85 4.10 4.78
2gsaA02 79.11 Porphyrin and chlorophyll metabolismGlutamate-1-semialdehyde 2,1-aminomutaseGlutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]Synechococcus elongatus PCC 6301Metabolic pathways 3.40.640.10 249 14 84 3.63 4.29
3k40A02 79.07 Dopamine biosynthetic process from tyrosineDevelopmental pigmentationGrowthProtein bindingDrosophila melanogaster 3.40.640.10 267 7 83 3.09 3.68
3kgwA02 79.00 Mus musculusSerine--pyruvate aminotransferase, mitochondrialPeroxisomeOxalic acid secretionGlyoxylate metabolic process 3.40.640.10 227 16 80 3.57 4.43
2qmaA03 78.77 Diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]Vibrio parahaemolyticusGlycine, serine and threonine metabolismDiaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylaseMetabolic pathways 3.40.640.10 238 11 81 3.30 4.04
1gd9A02 78.68 Tyrosine metabolismArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Pyrococcus horikoshiiMetabolic pathways 3.40.640.10 223 11 79 3.35 4.20
2oatA02 78.67 Ornithine--oxo-acid transaminase [EC:2.6.1.13]Arginine and proline metabolismOrnithine-oxo-acid transaminase activityVisual perceptionHomo sapiens 3.40.640.10 250 8 86 3.91 4.50
1svvA01 78.47 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.40.640.10 242 12 85 3.34 3.90
1sffA02 78.30 Valine, leucine and isoleucine degradationPropanoate metabolismMetabolic pathwaysButanoate metabolismBeta-Alanine metabolism 3.40.640.10 260 9 86 3.94 4.57
1fg7A01 78.20 Tyrosine metabolismHistidine metabolismMetabolic pathwaysPhenylalanine metabolismNovobiocin biosynthesis 3.40.640.10 203 15 73 2.45 3.34
3ftbA02 77.93 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolismMetabolic pathways 3.40.640.10 222 10 81 2.87 3.51
1s0aA02 77.71 Biotin metabolismMetabolic pathwaysAdenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseEscherichia coli K-12 3.40.640.10 268 10 83 4.11 4.90
1ajsB02 77.00 Tyrosine metabolismArginine and proline metabolismSus scrofaAspartate aminotransferase [EC:2.6.1.1]Aspartate aminotransferase, cytoplasmic 3.40.640.10 278 9 82 3.85 4.67
2q7wA02 76.44 Tyrosine metabolismArginine and proline metabolismMetabolic pathwaysPhenylalanine metabolismCysteine and methionine metabolism 3.40.640.10 243 10 84 4.09 4.86
3ffhB02 76.27 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 208 9 76 3.30 4.31
2hoxA02 76.24 Alliin lyase 1Allium sativum 3.40.640.10 210 9 72 3.57 4.92
1uu1A02 76.16 Thermotoga maritimaTyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 203 10 72 3.06 4.21
1c4kA02 76.12 Lactobacillus sp. 30AOrnithine decarboxylase, inducible 3.40.640.10 313 12 73 3.62 4.95
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Displaying entries 1 to 40 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2dkjA02
NFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTL
MGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGA
YLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFF
EALQPEFKEYSR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2dkjA02
NFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTL
MGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGA
YLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFF
EALQPEFKEYSR
BLAST against CATH

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Domain History Events (7)

Domain assigned by auto on 14 Aug 2007 23:11

Assigning to "3.40.640.10" based on similarity with "2dkjB02"

Flow stage update by auto on 14 Aug 2007 22:49

No in_process hits for Domain "2dkjA02" ready to be processed

Flow stage update by auto on 23 Jul 2007 14:39

Domain "2dkjA02" hits Domain "2dkjB02" (100% over 100%) which is currently in process

Flow stage update by auto on 23 Jul 2007 14:39

NW result present for Domain "2dkjA02"

Flow stage update by auto on 16 Jul 2007 22:38

All required files are present for Domain "2dkjA02"

Flow stage update by auto on 14 Jul 2007 06:01

Beginning processing for Domain "2dkjA02"

Insertion by auto on 14 Jul 2007 04:39

Final ChopClose added based on similarity with "2dkjB"