CATH Domain: 2dbyA02 XML data for domain: 2dbyA02

Molscript image for 2dbyA02
2dbyA02
PDB coordinates for domain 2dbyA02

PDB 2dby, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.11
3.10.20.30.11.1
3.10.20.30.11.1.1
3.10.20.30.11.1.1.1
3.10.20.30.11.1.1.1.1

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Segment boundaries for domain 2dbyA02

Chopping figure for domain 2dbyA02
DomainStart PDB ResidueStop PDB Residue
2dbyA01 2 46
2dbyA01 69 123
2dbyA01 203 283
2dbyA02 47 68
2dbyA02 284 366
2dbyA03 124 202

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.10.20.30.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tkeA01 77.82 Aminoacyl-tRNA biosynthesisThreonyl-tRNA synthetaseZinc ion bindingThreonyl-tRNA synthetase [EC:6.1.1.3]RNA binding 3.10.20.30 64 7 57 1.89 3.28
1zud400 76.87 Sulfur carrier protein ThiSThiamine biosynthesis ThiSEscherichia coli K-12 3.10.20.30 66 12 54 2.53 4.62
1tygB00 72.61 Sulfur carrier protein ThiSThiamine biosynthesis ThiSBacillus subtilis 3.10.20.30 65 13 54 2.48 4.52
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2dbyA02
DERLYALQRTFAKGERVPPVVPLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDERGFIRAEVIPWDKLVEAGGWARAK
ERGWVRLEGKDYEVQDGDVIYVLF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2dbyA02
DERLYALQRTFAKGERVPPVVPLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDXERGFIRAEVIPWDKLVEAGGWARA
KERGWVRLEGKDYEVQDGDVIYVLFNA
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 01 Sep 2007 06:11

Assigning to "3.10.20.30" based on similarity with "2dwqB02"

Flow stage update by auto on 01 Sep 2007 06:04

No in_process hits for Domain "2dbyA02" ready to be processed

Flow stage update by auto on 01 Sep 2007 06:04

NW result present for Domain "2dbyA02"

Flow stage update by auto on 30 Aug 2007 10:04

All required files are present for Domain "2dbyA02"

Flow stage update by auto on 29 Aug 2007 14:34

Beginning processing for Domain "2dbyA02"

Insertion by auto on 29 Aug 2007 14:05

Final ChopClose added based on similarity with "2dwqB"