CATH Domain: 2d5dA00 XML data for domain: 2d5dA00

Molscript image for 2d5dA00
2d5dA00
PDB coordinates for domain 2d5dA00

PDB 2d5d, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.100 Gene3D
2.40.50.100.1
2.40.50.100.1.1
2.40.50.100.1.1.1
2.40.50.100.1.1.1.1
2.40.50.100.1.1.1.1.2

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Segment boundaries for domain 2d5dA00

Chopping figure for domain 2d5dA00
DomainStart PDB ResidueStop PDB Residue
2d5dA00 77 146

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 2.40.50.100.1.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1bdoA00 91.34 Fatty acid biosynthesisPyruvate metabolismPropanoate metabolismFatty acid biosynthetic processAcetyl-CoA carboxylase biotin carboxyl carrier protein 2.40.50.100 80 39 91 2.11 2.31
2qf7A07 89.63 Pyruvate carboxylase subunit A [EC:6.4.1.1]Citrate cycle (TCA cycle)Rhizobium etli CFN 42Pyruvate carboxylase subunit B [EC:6.4.1.1]Pyruvate metabolism 2.40.50.100 72 33 90 2.65 2.93
1iyuA00 89.44 Azotobacter vinelandiiDihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex 2.40.50.100 79 40 88 1.43 1.61
1ghjA00 87.73 Azotobacter vinelandiiDihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2.40.50.100 79 25 88 1.95 2.20
2a6hC05 84.39 Pyrimidine metabolismThermus thermophilus HB8Purine metabolismDNA-directed RNA polymerase subunit betaDNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 2.40.50.100 75 18 78 2.54 3.23
1e2wA02 84.25 PhotosynthesisChlamydomonas reinhardtiiApocytochrome fApocytochrome fMetabolic pathways 2.40.50.100 60 20 79 3.17 3.98
1hczA02 84.17 Brassica rapa subsp. rapaApocytochrome f 2.40.50.100 59 18 77 2.71 3.52
1labA00 82.87 Geobacillus stearothermophilusDihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex 2.40.50.100 80 32 87 2.54 2.90
1g29102 76.27 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 20 60 2.80 4.60
3klrA00 75.98 Glycine cleavage system H protein, mitochondrialBos taurus 2.40.50.100 124 22 59 2.95 4.94
3e3xA03 75.98 Vibrio parahaemolyticusBipAGTP-binding protein 2.40.50.250 75 12 56 2.22 3.96
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2d5dA00
ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2d5dA00
MVVSENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 02 Dec 2006 09:21

Assigning to "2.40.50.100" based on similarity with "2evbA00"

Flow stage update by auto on 02 Dec 2006 09:18

No in_process hits for Domain "2d5dA00" ready to be processed

Flow stage update by auto on 02 Dec 2006 09:18

NW result present for Domain "2d5dA00"

Flow stage update by auto on 29 Nov 2006 13:24

All required files are present for Domain "2d5dA00"

Flow stage update by auto on 28 Nov 2006 21:32

Beginning processing for Domain "2d5dA00"

Insertion by auto on 28 Nov 2006 21:26

Final ChopClose added based on similarity with "2d5dB"