CATH Domain: 2d29A03

2d29A03

PDB 2d29, Chain A, Domain 3

CATH Code	Level Description	Links
1	Mainly Alpha
1.20	Up-down Bundle
1.20.140	Butyryl-CoA Dehydrogenase, subunit A; domain 3
1.20.140.10	Butyryl-CoA Dehydrogenase, subunit A, domain 3	Gene3D
1.20.140.10.1
1.20.140.10.1.1
1.20.140.10.1.1.1
1.20.140.10.1.1.1.1
1.20.140.10.1.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2d29A03

Domain	Start PDB Residue	Stop PDB Residue
2d29A01	5	122
2d29A02	123	233
2d29A03	236	384

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 1.20.140.10.1.1.1.1.1 (SIMAX score < 5)

Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
1rx0A03	94.00	Lipid metabolic processIsobutyryl-CoA dehydrogenase [EC:1.3.99.-]Valine, leucine and isoleucine degradationHomo sapiensIsobutyryl-CoA dehydrogenase, mitochondrial	1.20.140.10	155	39	96	1.06	1.10
2pg0A03	93.95	Fatty acid metabolismGeobacillus kaustophilusValine, leucine and isoleucine degradationPropanoate metabolismMetabolic pathways	1.20.140.10	149	36	100	1.05	1.05
1ivhA03	93.02	Isovaleryl-CoA dehydrogenase, mitochondrialHomo sapiens	1.20.140.10	141	38	93	1.10	1.17
1siqA03	92.82	Fatty acid metabolismGlutaryl-CoA dehydrogenase [EC:1.3.99.7]Glutaryl-CoA dehydrogenase activityHomo sapiensGlutaryl-CoA dehydrogenase, mitochondrial	1.20.140.10	155	26	95	1.18	1.24
1r2jA03	92.41	Streptomyces hygroscopicus subsp. ascomyceticusFkbI	1.20.140.10	144	31	94	1.18	1.25
2uxwA01	89.47	Fatty acid metabolismEnergy derivation by oxidation of organic compoundsMitochondrial nucleoidMetabolic pathwaysVery long-chain specific acyl-CoA dehydrogenase, mitochondrial	1.20.140.10	186	37	80	1.03	1.29
2rfqC03	84.98	Rhodococcus jostii RHA13-HSA hydroxylase, oxygenase	1.20.140.10	169	18	81	2.36	2.91
2or0A03	82.22	Rhodococcus jostii RHA1Hydroxylase	1.20.140.10	179	24	81	2.55	3.13
1w07A04	80.27	Fatty acid metabolismBiosynthesis of plant hormonesLong-chain fatty acid metabolic processMetabolic pathwaysArabidopsis thaliana	1.20.140.10	129	8	77	3.28	4.21
1u8vB03	79.31	Gamma-aminobutyrate metabolism dehydratase/isomeraseClostridium aminobutyricum	1.20.140.10	213	16	67	2.60	3.85
1dkxA02	76.18	RNA degradationCytoplasmZinc ion bindingMolecular chaperone DnaKChaperone protein dnaK	1.20.1270.10	80	8	53	2.41	4.49

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Domain ATOM Sequence

>pdb|2d29A03
KGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAG
RPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLL

BLAST against CATH

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Domain COMBS Sequence

>pdb|2d29A03
KGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAG
RPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLL

BLAST against CATH

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Domain History Events (16)

Domain assigned by auto on 02 Nov 2006 14:31

Assigning to "1.20.140.10" based on similarity with "1ws9A03"

Flow stage update by auto on 02 Nov 2006 14:25

No in_process hits for Domain "2d29A03" ready to be processed

Update comment by auto on 02 Nov 2006 10:07

Domain "2d29A03" hits Domain "2cx9D03" (100% over 100%) which is currently in process

Update comment by auto on 02 Nov 2006 06:12

Domain "2d29A03" hits Domain "2cx9A03" (100% over 100%) which is currently in process

Update comment by auto on 02 Nov 2006 03:17

Domain "2d29A03" hits Domain "2cx9C03" (100% over 100%) which is currently in process

Update comment by auto on 01 Nov 2006 21:56

Domain "2d29A03" hits Domain "2cx9B03" (100% over 100%) which is currently in process