CATH Domain: 2d1cA01 XML data for domain: 2d1cA01

Molscript image for 2d1cA01
2d1cA01
PDB coordinates for domain 2d1cA01

PDB 2d1c, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.718 Isopropylmalate Dehydrogenase
3.40.718.10 Isopropylmalate Dehydrogenase Gene3D
3.40.718.10.1
3.40.718.10.1.1
3.40.718.10.1.1.1
3.40.718.10.1.1.1.1
3.40.718.10.1.1.1.1.1

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Segment boundaries for domain 2d1cA01

Chopping figure for domain 2d1cA01
DomainStart PDB ResidueStop PDB Residue
2d1cA01 2 385
2d1cA02 386 496

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.40.718.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hqsA00 86.28 Bacillus subtilisIsocitrate dehydrogenase [NADP]Citrate cycle (TCA cycle)Isocitrate dehydrogenase [EC:1.1.1.42]Glutathione metabolism 3.40.718.10 422 34 82 2.02 2.46
1cnzA00 86.06 Metabolic pathwaysValine, leucine and isoleucine biosynthesisSalmonella enterica subsp. enterica serovar Typhimurium3-isopropylmalate dehydrogenase3-isopropylmalate dehydrogenase [EC:1.1.1.85] 3.40.718.10 363 31 88 2.75 3.12
1w0dA00 85.88 Metabolic pathwaysValine, leucine and isoleucine biosynthesis3-isopropylmalate dehydrogenase3-isopropylmalate dehydrogenase [EC:1.1.1.85]Mycobacterium tuberculosis 3.40.718.10 337 31 84 2.51 2.96
2uxqB00 81.85 Desulfotalea psychrophilaCitrate cycle (TCA cycle)Isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]Metabolic pathwaysProbable isocitrate dehydrogenase 3.40.718.10 401 17 85 3.30 3.88
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2d1cA01
PLITTETGKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTR
VVLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKL
ISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIV
TTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENAL
LYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNLGKTPRKTQVRGYKPFRLPQVDGAIAPIVPR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2d1cA01
MPLITTETGKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKT
RVVLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLK
LISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVI
VTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENA
LLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNLGKTPRKTQVRGYKPFRLPQVDGAIAPIVPR
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 12 Jul 2007 12:20

Assigning to "3.40.718.10" based on similarity with "2d1cB01"

Flow stage update by auto on 12 Jul 2007 12:19

No in_process hits for Domain "2d1cA01" ready to be processed

Update comment by auto on 12 Jul 2007 10:00

Domain "2d1cA01" hits Domain "2d1cB01" (100% over 100%) which is currently in process

Flow stage update by auto on 12 Jul 2007 09:59

Domain "2d1cA01" hits Domain "2d1cB01" (100% over 100%) which is currently in process

Flow stage update by auto on 12 Jul 2007 09:59

NW result present for Domain "2d1cA01"

Flow stage update by auto on 07 Jul 2007 20:00

All required files are present for Domain "2d1cA01"

Flow stage update by auto on 06 Jul 2007 14:25

Beginning processing for Domain "2d1cA01"

Insertion by auto on 06 Jul 2007 14:00

Final ChopClose added based on similarity with "2d1cB"