CATH Domain: 2cyaA01 XML data for domain: 2cyaA01

Molscript image for 2cyaA01
2cyaA01
PDB coordinates for domain 2cyaA01

PDB 2cya, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.19
3.40.50.620.19.1
3.40.50.620.19.1.1
3.40.50.620.19.1.1.1
3.40.50.620.19.1.1.1.1

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Segment boundaries for domain 2cyaA01

Chopping figure for domain 2cyaA01
DomainStart PDB ResidueStop PDB Residue
2cyaA01 4 214
2cyaA02 215 361

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.40.50.620.19.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wq4A01 82.30 Aminoacyl-tRNA biosynthesisMembraneTyrosyl-tRNA synthetaseTyrosyl-tRNA synthetase [EC:6.1.1.1]Escherichia coli K-12 3.40.50.620 226 15 88 3.32 3.73
2ip1A01 78.54 Tryptophan-tRNA ligase activityProtein bindingTryptophanyl-tRNA synthetase, cytoplasmicAminoacyl-tRNA biosynthesisCytoplasm 3.40.50.620 242 16 81 3.34 4.08
1irxA01 78.14 Aminoacyl-tRNA biosynthesisLysyl-tRNA synthetase, class I [EC:6.1.1.6]Pyrococcus horikoshiiLysyl-tRNA synthetase 3.40.50.620 224 11 82 3.81 4.61
1qtqA05 76.77 Aminoacyl-tRNA biosynthesisMetabolic pathwaysGlutaminyl-tRNA synthetaseGlutamine-tRNA ligase activityGlutaminyl-tRNA aminoacylation 3.40.50.620 123 11 59 2.44 4.13
1j09A01 76.48 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 3.40.50.620 121 15 58 2.20 3.79
3focA01 75.97 Aminoacyl-tRNA biosynthesisTryptophanyl-tRNA synthetase [EC:6.1.1.2]Giardia lamblia ATCC 50803Tryptophanyl-tRNA synthetaseTryptophan metabolism 3.40.50.620 285 15 68 3.09 4.49
3do8A00 75.31 Phosphopantetheine adenylyltransferaseArchaeoglobus fulgidusPantetheine-phosphate adenylyltransferase [EC:2.7.7.3]Pantothenate and CoA biosynthesisMetabolic pathways 3.40.50.620 135 11 59 2.35 3.95
1rqgA01 75.01 Aminoacyl-tRNA biosynthesisSelenoamino acid metabolismPyrococcus abyssiMethionyl-tRNA synthetaseMethionyl-tRNA synthetase [EC:6.1.1.10] 3.40.50.620 182 9 65 3.03 4.64
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2cyaA01
VDVEERFNRIARNTVEIVTEEELKGLLASGARIKGYIGYEPSGVAHIGWLVWMYKVKDLVEAGVDFSVLEATWHAYINDK
LGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALAEEAEVDASKLIYPLMQ
VSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPII
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2cyaA01
MVRVDVEERFNRIARNTVEIVTEEELKGLLASGARIKGYIGYEPSGVAHIGWLVWMYKVKDLVEAGVDFSVLEATWHAYI
NDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDA
SKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPII
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 28 Nov 2006 18:33

Assigning to "3.40.50.620" based on similarity with "2cycA01"

Flow stage update by auto on 28 Nov 2006 18:22

No in_process hits for Domain "2cyaA01" ready to be processed

Flow stage update by auto on 28 Nov 2006 18:22

NW result present for Domain "2cyaA01"

Flow stage update by auto on 28 Nov 2006 18:22

All required files are present for Domain "2cyaA01"

Flow stage update by auto on 28 Nov 2006 18:21

Beginning processing for Domain "2cyaA01"

Insertion by cuff on 21 Nov 2006 18:34

yet another nice batch of choppings from Tony :)