CATH Domain: 2cnqA02

2cnqA02

PDB 2cnq, Chain A, Domain 2

CATH Code	Level Description	Links
3	Alpha Beta
3.30	2-Layer Sandwich
3.30.470	D-amino Acid Aminotransferase; Chain A, domain 1
3.30.470.20	ATP-grasp fold, B domain	Gene3D
3.30.470.20.2
3.30.470.20.2.1
3.30.470.20.2.1.1
3.30.470.20.2.1.1.1
3.30.470.20.2.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2cnqA02

Domain	Start PDB Residue	Stop PDB Residue
2cnqA01	2	112
2cnqA02	113	258

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.30.470.20.2.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	3kreA02	87.01	Phosphoribosylaminoimidazole-succinocarboxamide synthasePurine metabolismPhosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]Ehrlichia chaffeensis str. ArkansasMetabolic pathways	3.30.470.20	138	21	84	1.93	2.28

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Domain ATOM Sequence

>pdb|2cnqA02
KLIPLEVIVRGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEHDENISPAQAAELVGEDLSRRVAELA
VKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSSRFWNGASYKVGESQDSY

BLAST against CATH

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Domain COMBS Sequence

>pdb|2cnqA02
KLIPLEVIVRGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAELVGEDLSRRVA
ELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSSRFWNGASYKVGESQDSY

BLAST against CATH

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Domain History Events (11)

Domain assigned by auto on 01 Nov 2006 18:36

Assigning to "3.30.470.20" based on similarity with "1a48002"