CATH Domain: 2calA00 XML data for domain: 2calA00

Molscript image for 2calA00
2calA00
PDB coordinates for domain 2calA00

PDB 2cal, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.420 Cupredoxins - blue copper proteins Gene3D
2.60.40.420.2
2.60.40.420.2.1
2.60.40.420.2.1.1
2.60.40.420.2.1.1.1
2.60.40.420.2.1.1.1.1

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Segment boundaries for domain 2calA00

Chopping figure for domain 2calA00
DomainStart PDB ResidueStop PDB Residue
2calA00 1003 1155

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.60.40.420.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2j5wA02 78.90 Ferroxidase activityChaperone bindingExtracellular spaceCeruloplasmin [EC:1.16.3.1]Porphyrin and chlorophyll metabolism 2.60.40.420 150 8 67 3.32 4.93
2ccwA00 78.85 Azurin-2Achromobacter xylosoxidans 2.60.40.420 129 14 67 2.79 4.10
1sddB02 78.08 Coagulation factor VBos taurusCoagulation factor V (labile factor)Complement and coagulation cascades 2.60.40.420 125 8 66 3.21 4.86
1ibyA00 77.55 Chain A, Red Copper Protein NitrosocyaninNitrosomonas europaea 2.60.40.420 112 13 60 2.89 4.75
1kv7A03 76.86 Blue copper oxidase cueOResponse to copper ionPeriplasmic spaceCopper ion bindingOxidoreductase activity, oxidizing metal ions 2.60.40.420 149 6 61 2.69 4.38
1cyxA00 76.64 Oxidative phosphorylationMetabolic pathwaysIntegral to plasma membraneOxidoreduction-driven active transmembrane transporter activityEscherichia coli K-12 2.60.40.420 158 10 58 2.32 3.94
1v54B02 76.48 Cardiac muscle contractionParkinson's diseaseOxidative phosphorylationCytochrome c oxidase subunit 2Alzheimer's disease 2.60.40.420 136 9 61 2.78 4.52
1ikoP00 73.91 Receptor bindingOrgan morphogenesisPlasma membraneLymph vessel developmentNotch signaling pathway 2.60.40.420 141 5 66 3.17 4.75
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2calA00
LDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAAAVLPGFPFPSFEVHDKKNPTLEIPAGATVDVTFINTNKG
FGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPGMAATGMFGKIVVK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2calA00
ALDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAAAVLPGFPFPSFEVHDKKNPTLEIPAGATVDVTFINTNK
GFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPGMAATGMFGKIVVK
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 22:02

Assigning to "2.60.40.420" based on similarity with "1cur000" (NWSI: 98.7012987012987, NWO: 99.3548387096774, SPS: 88.84, SPO: 98, RMSD: 1.46)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "2calA00"

Flow stage update by auto on 28 Apr 2006 17:49

All required files are present for Domain "2calA00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2calA00"

Insertion by auto on 15 Mar 2006 03:32

Final ChopClose added based on similarity with "1cur0" [LEE: 0, LME: 0, MR: 2, LG: 2, SS: 88.84, SI: 98.7012987012987, SO: 99.3548387096774]