CATH Domain: 2c78A03 XML data for domain: 2c78A03

Molscript image for 2c78A03
2c78A03
PDB coordinates for domain 2c78A03

PDB 2c78, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.6
2.40.30.10.6.1
2.40.30.10.6.1.1
2.40.30.10.6.1.1.1
2.40.30.10.6.1.1.1.1

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Segment boundaries for domain 2c78A03

Chopping figure for domain 2c78A03
DomainStart PDB ResidueStop PDB Residue
2c78A01 9 213
2c78A02 216 307
2c78A03 311 404

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.40.30.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kjzA03 86.31 Pyrococcus abyssiTranslation initiation factor eIF-2 gamma subunitTranslation initiation factor 2 subunit gamma 2.40.30.10 92 20 87 2.28 2.61
1r5bA03 86.25 Eukaryotic peptide chain release factor GTP-binding subunitProtein heterodimerization activityTranslation release factor activityPeptide chain release factor eRF subunit 2Schizosaccharomyces pombe 2.40.30.10 110 25 80 1.63 2.01
1aipE03 84.62 Elongation factor Tu-AElongation factor EF-Tu [EC:3.6.5.3]Thermus thermophilus 2.40.30.10 56 100 59 0.89 1.49
2hmaA03 82.96 TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [EC:2.1.1.61]TRNA-specific 2-thiouridylase mnmAStreptococcus pneumoniae 2.40.30.10 89 17 80 2.50 3.09
1wb1B03 81.49 Methanococcus maripaludisMJ0495-like protein 2.40.30.10 112 15 78 2.27 2.89
1v5vA03 79.28 Pyrococcus horikoshiiProbable aminomethyltransferase 2.40.30.110 75 8 79 3.75 4.70
1pj5A05 78.84 N,N-dimethylglycine oxidaseArthrobacter globiformis 2.40.30.110 78 12 80 3.82 4.72
1wb1B02 78.24 Methanococcus maripaludisMJ0495-like protein 2.40.30.10 92 9 76 3.55 4.63
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2c78A03
TPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIRE
GGRTVGAGVVTKIL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2c78A03
TPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIRE
GGRTVGAGVVTKIL
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 07 Dec 2006 05:31

Assigning to "2.40.30.10" based on similarity with "1exmA03"

Flow stage update by auto on 07 Dec 2006 05:26

No in_process hits for Domain "2c78A03" ready to be processed

Flow stage update by auto on 07 Dec 2006 05:26

NW result present for Domain "2c78A03"

Flow stage update by auto on 06 Dec 2006 17:23

All required files are present for Domain "2c78A03"

Flow stage update by auto on 05 Dec 2006 21:26

Beginning processing for Domain "2c78A03"

Insertion by auto on 05 Dec 2006 21:21

Final ChopClose added based on similarity with "1exmA"