CATH Domain: 2c78A02 XML data for domain: 2c78A02

Molscript image for 2c78A02
2c78A02
PDB coordinates for domain 2c78A02

PDB 2c78, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.9
2.40.30.10.9.1
2.40.30.10.9.1.1
2.40.30.10.9.1.1.1
2.40.30.10.9.1.1.1.1

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Segment boundaries for domain 2c78A02

Chopping figure for domain 2c78A02
DomainStart PDB ResidueStop PDB Residue
2c78A01 9 213
2c78A02 216 307
2c78A03 311 404

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 2.40.30.10.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1r5bA02 91.87 Eukaryotic peptide chain release factor GTP-binding subunitProtein heterodimerization activityTranslation release factor activityPeptide chain release factor eRF subunit 2Schizosaccharomyces pombe 2.40.30.10 89 28 93 1.17 1.25
1wb1B02 89.33 Methanococcus maripaludisMJ0495-like protein 2.40.30.10 92 32 95 1.77 1.85
1aipE02 88.88 Elongation factor Tu-AElongation factor EF-Tu [EC:3.6.5.3]Thermus thermophilus 2.40.30.10 130 98 70 0.75 1.06
1xe1A00 88.56 Pyrococcus furiosusPutative uncharacterized protein 2.40.30.10 89 25 90 3.70 4.10
1g7sA04 86.90 Methanothermobacter thermautotrophicus str. Delta HTranslation initiation factor IF-2 unclassified subunitProbable translation initiation factor IF-2 2.40.30.10 89 13 92 2.58 2.79
2bm0A02 86.60 Elongation factor GElongation factor EF-G [EC:3.6.5.3]Thermus thermophilus 2.40.30.10 103 19 82 1.63 1.98
1g7sA02 85.69 Methanothermobacter thermautotrophicus str. Delta HTranslation initiation factor IF-2 unclassified subunitProbable translation initiation factor IF-2 2.40.30.10 108 18 82 1.73 2.10
1d1nA00 83.83 Geobacillus stearothermophilusTranslation initiation factor IF-2 2.40.30.10 98 14 91 3.40 3.70
1y0yA02 79.08 Endoglucanase [EC:3.2.1.4]Starch and sucrose metabolismPyrococcus horikoshiiTetrahedral aminopeptidase 2.40.30.40 81 11 78 3.66 4.68
2fvgA02 78.77 Endoglucanase [EC:3.2.1.4]Thermotoga maritimaStarch and sucrose metabolismEndoglucanase 2.40.30.40 76 13 75 3.71 4.95
1n0uA02 78.71 Positive regulation of translational elongationElongation factor 2Elongation factor EF-2 [EC:3.6.5.3]Ribonucleoprotein bindingProtein binding 2.40.30.10 148 18 60 2.15 3.58
2ey4C00 78.24 Pyrococcus furiosusSmall nucleolar rnp gar1-like proteinRNA-binding protein 2.40.10.230 73 12 75 3.09 4.12
2wssA01 77.85 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]Huntington's diseaseParkinson's diseaseOxidative phosphorylationBos taurus 2.40.30.20 93 15 75 3.33 4.42
1vhoA02 77.80 Endoglucanase [EC:3.2.1.4]Thermotoga maritimaStarch and sucrose metabolismEndoglucanase 2.40.30.40 76 14 70 3.29 4.66
2ck3A01 77.56 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]Huntington's diseaseOxidative phosphorylationParkinson's diseaseBos taurus 2.40.30.20 70 18 73 2.94 3.98
2ck3D01 77.23 ATP catabolic processParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseMetabolic pathways 2.40.10.170 73 12 75 3.62 4.83
2gpjA01 76.72 Siderophore-interacting proteinShewanella putrefaciens CN-32 2.40.30.10 98 5 76 3.72 4.86
1qfjA01 76.37 Porphyrin and chlorophyll metabolismAquacobalamin reductase / NAD(P)H-flavin reductase [EC:1.16.1.3 1.5.1.29]NAD(P)H-flavin reductaseEscherichia coli K-12 2.40.30.10 91 9 84 3.98 4.69
3kl9A02 74.78 Glutamyl aminopeptidase [EC:3.4.11.7]Glutamyl aminopeptidaseStreptococcus pneumoniae R6 2.40.30.40 74 5 69 3.30 4.74
3cpxA02 74.57 Aminopeptidase, M42 familyCytophaga hutchinsonii ATCC 33406 2.40.30.40 61 13 65 2.87 4.40
1ddgA01 72.45 Sulfur metabolismMetabolic pathwaysSulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]Sulfite reductase [NADPH] flavoprotein alpha-componentProtein binding 2.40.30.10 114 4 63 3.14 4.97
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2c78A02
DVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSR
EEVERGQVLAKP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2c78A02
DVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSR
EEVERGQVLAKP
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 07 Dec 2006 05:31

Assigning to "2.40.30.10" based on similarity with "1exmA02"

Flow stage update by auto on 07 Dec 2006 05:26

No in_process hits for Domain "2c78A02" ready to be processed

Flow stage update by auto on 07 Dec 2006 05:26

NW result present for Domain "2c78A02"

Flow stage update by auto on 06 Dec 2006 17:23

All required files are present for Domain "2c78A02"

Flow stage update by auto on 05 Dec 2006 21:26

Beginning processing for Domain "2c78A02"

Insertion by auto on 05 Dec 2006 21:21

Final ChopClose added based on similarity with "1exmA"