CATH Domain: 2bt6B00 XML data for domain: 2bt6B00

Molscript image for 2bt6B00
2bt6B00
PDB coordinates for domain 2bt6B00

PDB 2bt6, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.6
3.10.20.30.6.1
3.10.20.30.6.1.1
3.10.20.30.6.1.1.1
3.10.20.30.6.1.1.1.1

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Segment boundaries for domain 2bt6B00

Chopping figure for domain 2bt6B00
DomainStart PDB ResidueStop PDB Residue
2bt6B00 5 108

Structural Neighbourhood (39 entries)

There are 39 matching structural neighberhood comparisons for CATH ID 3.10.20.30.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 39 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xlqA00 90.28 PutidaredoxinPseudomonas putida 3.10.20.30 106 30 95 1.60 1.68
1i7hC00 89.13 2Fe-2S ferredoxinFerredoxin, 2Fe-2SProtein bindingEscherichia coli K-12 3.10.20.30 108 30 89 1.84 2.05
1l5pA00 87.11 FerredoxinTrichomonas vaginalis 3.10.20.30 93 23 89 2.46 2.75
2bs2B01 79.20 Benzoate degradation via CoA ligationButanoate metabolismOxidative phosphorylationTwo-component systemCitrate cycle (TCA cycle) 3.10.20.30 106 11 73 2.38 3.23
2piaA03 78.78 Burkholderia cepaciaPhthalate dioxygenase reductase 3.10.20.30 96 12 81 3.96 4.85
2h88B01 78.10 Citrate cycle (TCA cycle)Oxidative phosphorylationSuccinate dehydrogenase (ubiquinone) iron-sulfur protein [EC:1.3.5.1]Gallus gallusMetabolic pathways 3.10.20.30 107 8 72 2.59 3.55
1v2yA00 77.36 U11/U12 small nuclear ribonucleoprotein 25 kDa proteinMus musculus 3.10.20.90 105 10 67 3.28 4.85
1wx9A00 77.35 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 9 67 2.56 3.80
2rd0A01 77.24 Jak-STAT signaling pathwayAldosterone-regulated sodium reabsorptionNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathway 3.10.20.90 100 8 73 3.14 4.30
2he7A01 77.11 Tight junctionErythrocyte membrane protein band 4.1Homo sapiensBand 4.1-like protein 3Cell-cell junction 3.10.20.90 80 8 72 3.19 4.42
1v5oA00 77.05 Mus musculusDNA damage-inducible protein 1Protein DDI1 homolog 1 3.10.20.90 102 6 68 2.72 3.98
1wywB00 77.03 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein bindingProtein sumoylation 3.10.20.90 79 11 66 2.86 4.31
1wxmA01 76.97 Bladder cancerPathways in cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 11 67 2.92 4.34
1wm3A00 76.88 Small ubiquitin-related modifierHomo sapiensSmall ubiquitin-related modifier 2Protein sumoylationProtein binding 3.10.20.90 72 13 64 2.81 4.36
1vlbA01 76.73 Desulfovibrio gigasAldehyde oxidoreductase 3.10.20.30 74 16 70 2.81 4.00
1uh6A00 76.65 Mus musculusUbiquitin-like protein 5Ubiquitin-like protein 5 3.10.20.90 100 11 66 2.82 4.25
2kd0A01 76.35 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 11 65 2.79 4.27
1y8rC00 76.32 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein sumoylationProtein binding 3.10.20.90 84 10 66 2.80 4.22
3a4rA00 76.29 Mus musculusNFATC2-interacting proteinRegulation of transcription, DNA-dependentCytokine production 3.10.20.90 79 5 62 3.06 4.90
1j8cA00 76.10 CytoplasmPlasma membraneHomo sapiensUbiquilinUbiquilin-2 3.10.20.90 103 12 66 2.75 4.14
1z2mA02 76.03 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 15 67 2.68 3.98
2gbjB00 76.01 3.10.20.90 84 13 65 2.88 4.40
2bwfA00 75.95 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 11 66 2.66 4.01
1m94A00 75.81 Ubiquitin-like protein 5Protein modification processProtein bindingNuclear mRNA splicing, via spliceosomeMating projection 3.10.20.90 73 19 65 3.03 4.63
2fnjB00 75.66 Renal cell carcinomaPathways in cancerUbiquitin mediated proteolysisMus musculusTranscription elongation factor B polypeptide 2 3.10.20.90 98 7 66 2.73 4.11
1h8cA00 75.63 Cytoplasmic sequestering of NF-kappaBHeat shock protein bindingFAS-associated factor 1CytosolPositive regulation of protein complex assembly 3.10.20.90 82 12 66 2.93 4.42
2zeqA00 75.40 Synaptic transmission, glutamatergicLearningAdult locomotory behaviorParkinson's diseaseDopamine metabolic process 3.10.20.90 78 8 67 2.99 4.44
2fazA00 75.38 E3 ubiquitin-protein ligase UHRF1RNA polymerase II transcription factor activityProtein bindingCell proliferationSequence-specific DNA binding transcription factor activity 3.10.20.90 77 9 66 2.89 4.36
2r2oA00 75.28 Semaphorin receptor bindingPlexin BSemaphorin receptor activityHomo sapiensPlexin-B1 3.10.20.90 98 8 72 3.60 4.99
1wgdA00 75.13 Endoplasmic reticulum membraneHomo sapiensHomocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 proteinProtein binding 3.10.20.90 93 9 69 3.38 4.88
1wh3A01 75.00 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 18 65 2.81 4.30
1yqbA01 74.88 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 14 65 2.99 4.57
1h4rA01 74.77 Negative regulation of cell-cell adhesionSchwann cell proliferationCytoskeletonNucleolusEarly endosome 3.10.20.90 78 8 70 3.43 4.89
1ryjA00 74.68 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 3.10.20.30 70 10 59 2.93 4.91
1s3sH00 74.38 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 3.10.20.90 107 5 68 3.25 4.76
1v86A00 74.20 Mus musculusPutative uncharacterized protein 3.10.20.90 95 6 62 2.93 4.69
1se9A00 74.20 Membrane-anchored ubiquitin-fold protein 1Arabidopsis thaliana 3.10.20.90 101 6 66 3.31 4.99
1wxsA00 73.96 CytoplasmUbiquitin-fold modifier 1NucleusProtein ufmylationHomo sapiens 3.10.20.90 88 6 68 3.33 4.88
1z2mA01 73.08 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 75 10 67 3.22 4.78
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Displaying entries 1 to 39 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2bt6B00
DKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGL
TDRSRLGCQICLTKAMDNMTVRVP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2bt6B00
GSSGDKITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDL
AYGLTDRSRLGCQICLTKAMDNMTVRVP
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:20

Assigning to "3.10.20.30" based on similarity with "2bt6A00" (NWSI: 100, NWO: 100, SPS: 99.17, SPO: 100, RMSD: 0.20)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "2bt6B00"

Flow stage update by auto on 28 Apr 2006 17:48

All required files are present for Domain "2bt6B00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2bt6B00"

Insertion by auto on 15 Mar 2006 01:41

Final ChopClose added based on similarity with "1l6uA" [LEE: 0, LME: 0, MR: 4, LG: 4, SS: 89.95, SI: 98.1481481481482, SO: 100]