CATH Domain: 2bs2B01 XML data for domain: 2bs2B01

Molscript image for 2bs2B01
2bs2B01
PDB coordinates for domain 2bs2B01

PDB 2bs2, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.14
3.10.20.30.14.1
3.10.20.30.14.1.1
3.10.20.30.14.1.1.1
3.10.20.30.14.1.1.1.1

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Segment boundaries for domain 2bs2B01

Chopping figure for domain 2bs2B01
DomainStart PDB ResidueStop PDB Residue
2bs2B01 1 106
2bs2B02 107 125
2bs2B02 137 240

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.10.20.30.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3etrA01 79.08 Bos taurusXanthine dehydrogenase/oxidase 3.10.20.30 85 15 69 2.38 3.41
1l5pA00 77.66 FerredoxinTrichomonas vaginalis 3.10.20.30 93 17 66 2.27 3.39
2rd0A01 77.19 Jak-STAT signaling pathwayAldosterone-regulated sodium reabsorptionNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathway 3.10.20.90 100 5 72 3.23 4.45
1wx9A00 75.61 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 11 68 3.04 4.41
1c1yB00 75.56 RAF proto-oncogene serine/threonine-protein kinaseNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathwayProtein binding 3.10.20.90 77 6 64 2.84 4.43
1wywB00 75.32 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein bindingProtein sumoylation 3.10.20.90 79 7 69 3.33 4.77
1z2mA02 75.23 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 7 67 3.14 4.62
1wgdA00 74.93 Endoplasmic reticulum membraneHomo sapiensHomocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 proteinProtein binding 3.10.20.90 93 7 71 3.37 4.70
2bwfA00 74.92 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 11 67 3.08 4.53
2kd0A01 74.57 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 9 63 3.04 4.81
1wm3A00 74.53 Small ubiquitin-related modifierHomo sapiensSmall ubiquitin-related modifier 2Protein sumoylationProtein binding 3.10.20.90 72 9 64 3.01 4.69
1y8rC00 74.32 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein sumoylationProtein binding 3.10.20.90 84 7 68 3.17 4.60
1wh3A01 73.79 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 9 63 3.11 4.92
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2bs2B01
MGRMLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTL
TKDFEDGVITLLPLPAFKLIKDLSVD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2bs2B01
MGRMLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTL
TKDFEDGVITLLPLPAFKLIKDLSVD
BLAST against CATH

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Domain History Events (8)

Domain assigned by auto on 15 Dec 2006 23:32

Assigning to "3.10.20.30" based on similarity with "1e7pB01"

Flow stage update by auto on 15 Dec 2006 23:31

No in_process hits for Domain "2bs2B01" ready to be processed

Update comment by auto on 15 Dec 2006 19:32

Domain "2bs2B01" hits Domain "2bs2E01" (100% over 100%) which is currently in process

Flow stage update by auto on 15 Dec 2006 19:31

Domain "2bs2B01" hits Domain "2bs2E01" (100% over 100%) which is currently in process

Flow stage update by auto on 15 Dec 2006 19:31

NW result present for Domain "2bs2B01"

Flow stage update by auto on 13 Dec 2006 19:36

All required files are present for Domain "2bs2B01"

Flow stage update by auto on 13 Dec 2006 02:34

Beginning processing for Domain "2bs2B01"

Insertion by auto on 12 Dec 2006 19:06

Final ChopClose added based on similarity with "1e7pB"