CATH Domain: 2bopA00 XML data for domain: 2bopA00

Molscript image for 2bopA00
2bopA00
PDB coordinates for domain 2bopA00

PDB 2bop, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.4
3.30.70.330.4.1
3.30.70.330.4.1.1
3.30.70.330.4.1.1.1
3.30.70.330.4.1.1.1.1

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Segment boundaries for domain 2bopA00

Chopping figure for domain 2bopA00
DomainStart PDB ResidueStop PDB Residue
2bopA00 326 410

Structural Neighbourhood (67 entries)

There are 67 matching structural neighberhood comparisons for CATH ID 3.30.70.330.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 67 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1r8hA00 92.45 Human papillomavirus type 6aRegulatory protein E2 3.30.70.330 87 27 95 3.03 3.18
2fb0A00 81.75 Bacteroides thetaiotaomicronPutative uncharacterized protein 3.30.70.900 91 8 79 2.89 3.65
1b4bA00 81.55 Geobacillus stearothermophilusArginine repressor 3.30.1360.40 71 4 69 2.39 3.44
1in0A01 81.23 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 14 75 2.45 3.25
1iujB00 80.67 TT1380 proteinThermus thermophilus 3.30.70.900 103 5 74 3.12 4.17
2od4B01 80.20 3.30.70.900 81 7 80 3.03 3.79
2pehA01 79.77 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 6 85 3.51 4.09
2nzcA00 79.69 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 6 84 3.73 4.40
1x5uA01 79.51 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 10 85 3.63 4.23
2do0A01 79.50 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 6 82 3.50 4.25
1cvjA01 79.44 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 7 83 3.58 4.29
1oiaA00 79.41 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 11 84 3.57 4.23
2rilA00 79.39 Antibiotic biosynthesis monooxygenaseShewanella loihica PV-4 3.30.70.900 91 5 87 3.17 3.61
1yx2A02 79.31 Nitrogen metabolismAminomethyltransferase [EC:2.1.2.10]One carbon pool by folateBacillus subtilisGlycine, serine and threonine metabolism 3.30.70.1400 81 8 72 3.14 4.30
1fjeB02 79.29 NucleolinMesocricetus auratus 3.30.70.330 84 7 85 3.89 4.53
2pgcA01 79.07 3.30.70.900 95 7 80 3.51 4.39
1nu4A00 79.05 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 91 11 80 3.71 4.62
2w25A02 79.02 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 12 80 3.45 4.31
2qfjA02 78.97 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 7 88 4.15 4.69
1uw4A00 78.95 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 5 87 3.68 4.19
1tr0A00 78.95 Populus tremulaStable protein 1 3.30.70.900 106 8 75 3.66 4.85
1no8A00 78.87 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 12 87 3.91 4.49
2bbeA00 78.59 Shewanella oneidensisPutative uncharacterized protein 3.30.70.900 92 2 80 3.19 3.97
2zfzF00 78.50 Transcriptional regulator of arginine metabolismArginine repressorMycobacterium tuberculosis 3.30.1360.40 76 5 67 2.62 3.91
2pd1A01 78.49 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 9 78 3.18 4.05
1u7lA01 78.49 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]Oxidative phosphorylationVacuolar acidificationProtein bindingVacuolar proton-transporting V-type ATPase, V1 domain 3.30.70.1180 91 7 76 3.09 4.02
2wriY03 78.46 Thermus thermophilus HB8Elongation factor GElongation factor EF-G [EC:3.6.5.3] 3.30.70.870 76 7 81 3.74 4.61
1fxlA02 78.44 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 7 80 3.69 4.61
1fjeB01 78.33 NucleolinMesocricetus auratus 3.30.70.330 81 7 83 3.74 4.48
2pgcA02 78.32 3.30.70.900 102 5 75 3.14 4.16
1cvjG02 78.29 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 5 81 3.88 4.74
1qm9A02 78.25 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 10 79 3.25 4.07
2od6A00 78.12 3.30.70.900 104 3 75 3.40 4.53
1x5oA01 78.12 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 4 84 3.94 4.64
1nzaA00 78.12 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 8 71 2.97 4.13
1utaA00 78.08 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 10 82 2.93 3.56
1i1gA02 78.00 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 3 84 3.61 4.26
3bguA01 77.69 Thermobifida fusca YXPutative uncharacterized protein 3.30.70.900 95 5 81 3.40 4.19
1vlyA02 77.40 RNA modificationTRNA-modifying protein ygfZFolic acid bindingEscherichia coli K-12 3.30.70.1400 84 10 75 2.99 3.97
1q8bA00 77.34 Bacillus subtilisUncharacterized protein yjcS 3.30.70.900 89 2 84 3.90 4.63
1eayD00 77.26 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 8 77 3.69 4.75
3bdeA00 77.22 Mll5499 proteinMesorhizobium loti 3.30.70.900 93 3 80 3.93 4.87
2op5A01 77.22 3.30.70.900 100 3 75 3.70 4.93
1xxaC00 77.19 Transcriptional regulator of arginine metabolismArginine repressorEscherichia coli K-12Plasmid recombination 3.30.1360.40 73 5 65 2.60 3.95
1ufwA00 76.98 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 11 72 3.27 4.50
1lfpA03 76.98 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 2 80 3.40 4.25
1sjqA00 76.88 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 8 81 3.98 4.86
2r4fA03 76.75 Terpenoid backbone biosynthesis3-hydroxy-3-methylglutaryl-coenzyme A reductaseGonad development3-hydroxy-3-methylglutaryl-CoA reductase [EC:1.1.1.34]Homo sapiens 3.30.70.420 117 8 61 2.74 4.45
1qm9A01 76.74 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 9 74 3.56 4.78
1s99A02 76.55 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 81 4 78 3.80 4.82
3bm7A00 76.53 Caulobacter vibrioidesPutative uncharacterized protein 3.30.70.900 101 10 75 3.44 4.57
2u1aA00 76.50 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 5 78 3.38 4.31
1konA03 76.49 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 6 74 3.04 4.10
1rwuA00 76.24 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 8 79 3.46 4.36
1r31A01 76.17 Pseudomonas mevalonii3-hydroxy-3-methylglutaryl-coenzyme A reductase 3.30.70.420 110 8 69 3.37 4.88
1m1hA01 75.90 Transcriptional antiterminator NusGTranscription antitermination protein nusGAquifex aeolicus 3.30.70.940 100 7 72 3.31 4.60
1sxlA00 75.43 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 1 78 3.60 4.59
1j4wA01 75.14 Transcription from RNA polymerase II promoterFar upstream element-binding proteinSequence-specific DNA binding transcription factor activityFar upstream element-binding protein 1Nucleus 3.30.1370.10 74 12 80 3.17 3.96
1jqgA01 75.03 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 2 76 3.15 4.09
1s99A01 74.90 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 7 77 3.78 4.87
1wj9A01 74.83 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 2 81 3.55 4.35
2pn6A02 74.82 150aa long hypothetical transcriptional regulatorSulfolobus tokodaii 3.30.70.920 98 5 73 3.00 4.08
1lfwA02 74.62 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 106 9 69 3.43 4.91
2ia0B02 74.43 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 5 71 3.50 4.88
1pytA00 74.33 Bos taurusCarboxypeptidase A1 [EC:3.4.17.1]Carboxypeptidase A1 3.30.70.340 94 3 77 3.70 4.76
2ftrA00 73.86 Bacillus haloduransBH0200 protein 3.30.70.900 92 7 78 3.68 4.70
1b7yB06 73.56 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 5 75 3.65 4.83
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Displaying entries 1 to 67 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2bopA00
SCFALISGTANQVKCYRFRVKKNHRHRYENCTTTWFTVADNGAERQGQAQILITFGSPSQRQDFLKHVPLPPGMNISGFT
ASLDF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2bopA00
SCFALISGTANQVKCYRFRVKKNHRHRYENCTTTWFTVADNGAERQGQAQILITFGSPSQRQDFLKHVPLPPGMNISGFT
ASLDF
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"