CATH Domain: 2bjuA02 XML data for domain: 2bjuA02

Molscript image for 2bjuA02
2bjuA02
PDB coordinates for domain 2bjuA02

PDB 2bju, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.5
2.40.70.10.5.1
2.40.70.10.5.1.1
2.40.70.10.5.1.1.1
2.40.70.10.5.1.1.1.1

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Segment boundaries for domain 2bjuA02

Chopping figure for domain 2bjuA02
DomainStart PDB ResidueStop PDB Residue
2bjuA01 1 175
2bjuA02 176 329

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 2.40.70.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1pfzA02 88.99 Plasmepsin II [EC:3.4.23.39]Plasmepsin-2Plasmodium falciparum 2.40.70.10 213 99 71 0.80 1.11
1dpjA02 88.31 Cellular response to starvationSporulation resulting in formation of a cellular sporeProteolysis involved in cellular protein catabolic processFungal-type vacuole lumenSaccharopepsin 2.40.70.10 154 27 94 2.07 2.20
3psgA02 87.93 Sus scrofaPepsin A 2.40.70.10 155 31 93 1.94 2.07
1hrnA02 87.11 Renin-angiotensin systemAngiotensin maturationRegulation of MAPKKK cascadeExtracellular spaceRenin 2.40.70.10 158 32 93 2.53 2.70
2aprA02 84.36 RhizopuspepsinRhizopus microsporus var. chinensis 2.40.70.10 149 18 93 2.39 2.56
1wkrA02 84.12 Irpex lacteusPolyporopepsin 2.40.70.10 170 19 88 2.86 3.22
1j71A02 83.91 Candida tropicalisCandidapepsin 2.40.70.10 161 20 90 2.24 2.49
1mppA02 80.17 Rhizomucor pusillusMucorpepsin 2.40.70.10 175 14 84 3.41 4.03
1lyaB00 79.56 LysosomeAspartic-type endopeptidase activityCathepsin D [EC:3.4.23.5]Homo sapiensCathepsin D 2.40.70.10 241 31 61 2.12 3.45
1t6eX02 78.42 Triticum aestivumXylanase inhibitor 2.40.70.10 187 12 80 3.71 4.59
1b5fB00 77.33 Preprocardosin ACynara cardunculus 2.40.70.10 87 36 54 2.47 4.53
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2bjuA02
RFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLP
TFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAKKNL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2bjuA02
RFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLP
TFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAKKNL
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:58

Assigning to "2.40.70.10" based on similarity with "1lf4A02" (NWSI: 100, NWO: 100, SPS: 95.72, SPO: 95, RMSD: 0.44)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "2bjuA02"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "2bjuA02"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2bjuA02"

Insertion by auto on 10 Mar 2006 04:13

Final ChopClose added based on similarity with "1me6A" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 94.00, SI: 100, SO: 100]