CATH Domain: 2bj0A00

2bj0A00

PDB 2bj0, Chain A, Domain 0

CATH Code	Level Description	Links
2	Mainly Beta
2.70	Distorted Sandwich
2.70.170	Acetylcholine Binding Protein; Chain: A,
2.70.170.10		Gene3D
2.70.170.10.1
2.70.170.10.1.1
2.70.170.10.1.1.1
2.70.170.10.1.1.1.1
2.70.170.10.1.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2bj0A00

Domain	Start PDB Residue	Stop PDB Residue
2bj0A00	1	203

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.70.170.10.1.1.1.1.1 (SIMAX score < 5)

Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
3eamA01	82.83	Glr4197 proteinGloeobacter violaceus	2.70.170.10	192	16	90	2.87	3.17
2vl0A01	82.09		2.70.170.10	189	14	82	2.51	3.03
2bg9B01	81.40	Acetylcholine receptor beta subunitTorpedo marmorata	2.70.170.10	207	14	93	2.99	3.19

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Domain ATOM Sequence

>pdb|2bj0A00
QIRWTLLNQITGESDVIPLSNNTPLNVSLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSSSLDQVSLPVSKM
WTPDLSFYNAIAAPELLSADRVVVSKDGSVIYVPSQRVRFTCDLINVDTEPGATCRIKVGSWTHDNKQFALITGEEGVVN
IAEYFDSPKFDLLSATQSLNRKKYSCCENMYDDIEITFAFRKK

BLAST against CATH

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Domain COMBS Sequence

>pdb|2bj0A00
QIRWTLLNQITGESDVIPLSNNTPLNVSLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSSSLDQVSLPVSKM
WTPDLSFYNAIAAPELLSADRVVVSKDGSVIYVPSQRVRFTCDLINVDTEPGATCRIKVGSWTHDNKQFALITGEEGVVN
IAEYFDSPKFDLLSATQSLNRKKYSCCENMYDDIEITFAFRKK

BLAST against CATH

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Domain History Events (14)

Domain assigned by auto on 02 Nov 2006 06:17

Assigning to "2.70.170.10" based on similarity with "2bj0C00"

Flow stage update by auto on 02 Nov 2006 06:12

No in_process hits for Domain "2bj0A00" ready to be processed

Update comment by auto on 02 Nov 2006 03:16

Domain "2bj0A00" hits Domain "2bj0B00" (100% over 100%) which is currently in process

Update comment by auto on 01 Nov 2006 21:56

Domain "2bj0A00" hits Domain "2bj0E00" (100% over 100%) which is currently in process