CATH Domain: 2bgsA00 XML data for domain: 2bgsA00

Molscript image for 2bgsA00
2bgsA00
PDB coordinates for domain 2bgsA00

PDB 2bgs, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.100 NADP-dependent oxidoreductase Gene3D
3.20.20.100.2
3.20.20.100.2.2
3.20.20.100.2.2.1
3.20.20.100.2.2.1.1
3.20.20.100.2.2.1.1.1

[top]
Segment boundaries for domain 2bgsA00

Chopping figure for domain 2bgsA00
DomainStart PDB ResidueStop PDB Residue
2bgsA00 13 320

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.20.20.100.2.2.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3krbA00 90.09 Giardia lamblia ATCC 50803Aldose reductase 3.20.20.100 303 37 92 1.77 1.92
1mi3A00 89.81 Candida tenuisNAD(P)H-dependent D-xylose reductase 3.20.20.100 319 37 92 1.97 2.14
2wzmA00 89.16 Uncharacterized oxidoreductase MSMEG_2407Mycobacterium smegmatis str. MC2 155 3.20.20.100 274 33 87 2.53 2.88
3eauA00 83.44 Rattus norvegicusVoltage-gated potassium channel subunit beta-2Potassium voltage-gated channel, Shaker-related subfamily A, beta member 2Protein heterooligomerizationProtein binding 3.20.20.100 327 22 81 3.22 3.96
1ur3M00 82.19 Escherichia coli K-12Oxidoreductase ydhF 3.20.20.100 290 23 83 3.67 4.39
1pyfA00 82.04 Protein iolSBacillus subtilisMyo-inositol catabolism protein IolS [EC:1.1.1.-] 3.20.20.100 309 19 84 3.10 3.66
1gveA00 80.96 [EC:1.-.-.-]Rattus norvegicusAldehyde reductase activityAflatoxin catabolic processAflatoxin B1 aldehyde reductase member 3 3.20.20.100 324 19 77 3.34 4.31
[1]
Displaying entries 1 to 7 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|2bgsA00
QDHFVLKSGHAMPAVGLGTWRAGSDTAHSVRTAITEAGYRHVDTAAEYGVEKEVGKGLKAAMEAGIDRKDLFVTSKIWCT
NLAPERVRPALENTLKDLQLDYIDLYHIHWPFRLKDGAHMPPEAGEVLEFDMEGVWKEMENLVKDGLVKDIGVCNYTVTK
LNRLLRSAKIPPAVCQMEMHPGWKNDKIFEACKKHGIHITAYSPLGSSEKNLAHDPVVEKVANKLNKTPGQVLIKWALQR
GTSVIPKSSKDERIKENIQVFGWEIPEEDFKVLCSIKDEKRVLTGEELFVNKTHGPYRSARDVWDHEN
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|2bgsA00
QDHFVLKSGHAMPAVGLGTWRAGSDTAHSVRTAITEAGYRHVDTAAEYGVEKEVGKGLKAAMEAGIDRKDLFVTSKIWCT
NLAPERVRPALENTLKDLQLDYIDLYHIHWPFRLKDGAHMPPEAGEVLEFDMEGVWKEMENLVKDGLVKDIGVCNYTVTK
LNRLLRSAKIPPAVCQMEMHPGWKNDKIFEACKKHGIHITAYSPLGSSEKNLAHDPVVEKVANKLNKTPGQVLIKWALQR
GTSVIPKSSKDERIKENIQVFGWEIPEEDFKVLCSIKDEKRVLTGEELFVNKTHGPYRSARDVWDHEN
BLAST against CATH

[top]
Domain History Events (7)

Domain assigned by auto on 14 Aug 2007 22:59

Assigning to "3.20.20.100" based on similarity with "2bgqA00"

Flow stage update by auto on 14 Aug 2007 22:47

No in_process hits for Domain "2bgsA00" ready to be processed

Flow stage update by auto on 21 Jul 2007 11:04

Domain "2bgsA00" hits Domain "2bgqA00" (100% over 98.7179487179487%) which is currently in process

Flow stage update by auto on 21 Jul 2007 11:03

NW result present for Domain "2bgsA00"

Flow stage update by auto on 16 Jul 2007 22:37

All required files are present for Domain "2bgsA00"

Flow stage update by auto on 14 Jul 2007 06:01

Beginning processing for Domain "2bgsA00"

Insertion by auto on 14 Jul 2007 04:24

Final ChopClose added based on similarity with "2bgqA"