CATH Domain: 2bfdB01 XML data for domain: 2bfdB01

Molscript image for 2bfdB01
2bfdB01
PDB coordinates for domain 2bfdB01

PDB 2bfd, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.970 Gene3D
3.40.50.970.5
3.40.50.970.5.1
3.40.50.970.5.1.1
3.40.50.970.5.1.1.1
3.40.50.970.5.1.1.1.1

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Segment boundaries for domain 2bfdB01

Chopping figure for domain 2bfdB01
DomainStart PDB ResidueStop PDB Residue
2bfdB01 17 213
2bfdB02 214 338

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.40.50.970.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2ozlB01 91.40 Pyruvate dehydrogenase (acetyl-transferring) activityPyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]Citrate cycle (TCA cycle)Pyruvate dehydrogenase E1 component subunit beta, mitochondrialTricarboxylic acid cycle 3.40.50.970 193 33 95 1.20 1.25
1ozhD01 81.13 Acetolactate synthase, catabolicKlebsiella pneumoniae 3.40.50.970 176 10 85 3.81 4.47
2uz1A01 81.08 Benzaldehyde lyasePseudomonas fluorescens 3.40.50.970 182 13 85 3.47 4.04
1t9bB01 80.84 Acetolactate synthase I/II/III large subunit [EC:2.2.1.6]Metabolic pathwaysValine, leucine and isoleucine biosynthesisButanoate metabolismFlavin adenine dinucleotide binding 3.40.50.970 185 11 87 3.77 4.32
2ez9A01 79.73 Pyruvate oxidase [EC:1.2.3.3]Lactobacillus plantarumPyruvate metabolismPyruvate oxidaseMetabolic pathways 3.40.50.970 184 7 89 4.41 4.94
2vk8A01 79.60 NucleusPyruvate metabolic processPyruvate decarboxylase activityProtein bindingMetabolic pathways 3.40.50.970 187 10 87 3.85 4.38
2wvgA01 79.37 Indolepyruvate decarboxylase [EC:4.1.1.74]Zymomonas mobilisTryptophan metabolismMetabolic pathwaysPyruvate decarboxylase 3.40.50.970 185 11 85 3.91 4.58
1v5eA03 77.56 3.40.50.970 190 10 80 3.66 4.53
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2bfdB01
QTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAE
IQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLL
SCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2bfdB01
QTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAE
IQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLL
SCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQA
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 20:30

Assigning to "3.40.50.970" based on similarity with "1oluB02" (NWSI: 100, NWO: 100, SPS: 98.98, SPO: 100, RMSD: 0.25)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "2bfdB01"

Flow stage update by auto on 28 Apr 2006 17:47

All required files are present for Domain "2bfdB01"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2bfdB01"

Insertion by auto on 17 Mar 2006 18:31

Final ChopClose added based on similarity with "1olsB" [LEE: 0, LME: 0, MR: 0, LG: 4, SS: 98.29, SI: 100, SO: 100]