CATH Domain: 2b6dA01 XML data for domain: 2b6dA01

Molscript image for 2b6dA01
2b6dA01
PDB coordinates for domain 2b6dA01

PDB 2b6d, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.12
3.40.190.10.12.1
3.40.190.10.12.1.1
3.40.190.10.12.1.1.1
3.40.190.10.12.1.1.1.48

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Segment boundaries for domain 2b6dA01

Chopping figure for domain 2b6dA01
DomainStart PDB ResidueStop PDB Residue
2b6dA01 343 414
2b6dA01 596 657
2b6dA02 415 595
2b6dA02 658 668

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.40.190.10.12.1.1.1.48 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1iejA01 91.22 Gallus gallusOvotransferrin 3.40.190.10 143 33 90 1.59 1.75
1h44A01 91.14 Serine-type endopeptidase activityLactotransferrinHomo sapiensHeparin bindingHumoral immune response 3.40.190.10 141 38 92 1.72 1.87
2d3iA03 89.72 Gallus gallusOvotransferrin 3.40.190.10 179 49 73 0.94 1.27
1cb6A01 86.72 Serine-type endopeptidase activityLactotransferrinHomo sapiensHeparin bindingStored secretory granule 3.40.190.10 180 38 72 1.56 2.16
1xs5A01 79.43 ABC transportersTreponema pallidumMembrane lipoprotein TpN32D-methionine transport system substrate-binding protein 3.40.190.10 134 8 82 4.11 4.96
1p99A01 78.64 ABC transportersLactococcal lipoproteinD-methionine transport system substrate-binding proteinStaphylococcus aureus subsp. aureus Mu50 3.40.190.10 144 6 81 3.28 4.00
3gzgA01 76.69 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri 3.40.190.10 120 10 80 3.50 4.35
1atgA01 75.69 Azotobacter vinelandiiBinding protein 3.40.190.10 122 6 81 3.69 4.54
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2b6dA01
TRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENAVVSRSDR
AAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2b6dA01
TRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENAVVSRSDR
AAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTY
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:49

Assigning to "3.40.190.10" based on similarity with "1nkxA01" (NWSI: 100, NWO: 100, SPS: 98.22, SPO: 100, RMSD: 0.39)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "2b6dA01"

Flow stage update by auto on 28 Apr 2006 17:49

All required files are present for Domain "2b6dA01"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2b6dA01"

Insertion by auto on 10 Mar 2006 19:38

Final ChopClose added based on similarity with "2b65A" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 98.61, SI: 100, SO: 100]