CATH Domain: 2awnB02 XML data for domain: 2awnB02

Molscript image for 2awnB02
2awnB02
PDB coordinates for domain 2awnB02

PDB 2awn, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.100 Gene3D
2.40.50.100.12
2.40.50.100.12.1
2.40.50.100.12.1.1
2.40.50.100.12.1.1.1
2.40.50.100.12.1.1.1.1

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Segment boundaries for domain 2awnB02

Chopping figure for domain 2awnB02
DomainStart PDB ResidueStop PDB Residue
2awnB01 2 238
2awnB02 239 288
2awnB02 348 363
2awnB03 298 346

Structural Neighbourhood (36 entries)

There are 36 matching structural neighberhood comparisons for CATH ID 2.40.50.100.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 36 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1bkbA02 85.80 Pyrobaculum aerophilumTranslation initiation factor 5A 2.40.50.140 62 12 84 2.56 3.02
1uebA02 85.72 Thermus thermophilus HB8Elongation factor EF-PElongation factor P 2.40.50.140 63 6 87 2.39 2.72
3d31A02 85.55 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 15 69 1.43 2.05
2r7dA03 84.37 Exoribonuclease II [EC:3.1.13.1]Ribonuclease II family proteinDeinococcus radiodurans 2.40.50.140 59 11 84 2.94 3.46
3i4oA00 83.18 Translation initiation factor IF-1Translation initiation factor IF-1Mycobacterium tuberculosis 2.40.50.140 68 10 86 3.62 4.17
1t9hA01 83.12 Ribosome biogenesis GTPase [EC:3.6.1.-]Putative ribosome biogenesis GTPase RsgABacillus subtilis 2.40.50.140 73 7 80 3.19 3.95
1hh2P02 83.08 N utilization substance protein AThermotoga maritima 2.40.50.140 63 7 80 2.97 3.70
1c9oA00 83.00 Bacillus caldolyticusCold shock protein cspBCold shock protein (beta-ribbon, CspA family) 2.40.50.140 66 12 84 3.12 3.68
1ty0A02 82.64 Streptococcus pyogenesExotoxin J 2.40.50.110 75 4 81 2.88 3.54
2p5zX04 82.29 Escherichia coli O6Putative uncharacterized protein 2.40.50.230 65 16 81 2.74 3.35
1k3rA02 82.28 Hypothetical proteinMethanothermobacter thermautotrophicus str. Delta HConserved protein 2.40.50.140 59 10 81 3.29 4.02
2qgqA02 82.09 Thermotoga maritimaRibosomal protein S12 methylthiotransferase rimO 2.40.50.140 59 8 83 3.71 4.45
3cp0A00 81.99 Corynebacterium glutamicumMembrane protein implicated in regulation of membrane protease activity 2.40.50.140 62 11 84 3.38 3.98
1oxxK02 81.95 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.140 45 6 62 1.51 2.43
1cukA01 81.84 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 6 84 3.52 4.15
3d0fA01 81.75 MrcA; penicillin-binding 1 (Peptidoglycan synthetase) transmembrane proteinPenicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]Peptidoglycan biosynthesisNitrosomonas europaeaMetabolic pathways 2.40.50.140 67 7 80 3.28 4.07
1g29102 81.39 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 11 60 1.80 2.97
3tssA02 81.09 Toxic shock syndrome toxin-1Staphylococcus aureus 2.40.50.110 71 7 77 3.18 4.11
2ztdA01 80.96 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 71 10 76 3.13 4.12
1uebA03 80.76 Thermus thermophilus HB8Elongation factor EF-PElongation factor P 2.40.50.140 58 12 71 2.36 3.31
1oxxK03 80.52 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.100 45 26 68 2.62 3.84
1eu3A02 80.51 Mitogenic exotoxin Z 2Streptococcus pyogenes 2.40.50.110 80 4 76 3.37 4.42
3d31A03 80.46 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.100 71 10 64 1.75 2.70
2asbA01 80.13 N utilization substance protein ATranscription elongation protein nusAMycobacterium tuberculosis 2.40.50.140 75 9 74 3.71 4.97
1dgsA04 79.92 DNA ligaseThermus filiformis 2.40.50.140 73 6 78 3.77 4.83
1fviA02 79.69 Paramecium bursaria Chlorella virus 1A544R protein 2.40.50.140 82 7 69 2.50 3.60
3irbA02 79.39 Sulfolobus solfataricusPutative uncharacterized protein 2.40.50.140 66 15 78 3.05 3.87
1kl9A01 79.30 Translation initiation factor activityTranslation initiation factor eIF-2 alpha subunitEukaryotic translation initiation factor 2 subunit 1PolysomeHomo sapiens 2.40.50.140 72 16 76 3.66 4.79
2jqoA01 79.26 Bacillus subtilisUncharacterized protein yobA 2.40.50.140 88 9 68 3.12 4.58
1rl2A01 78.88 Geobacillus stearothermophilus50S ribosomal protein L2 2.40.50.140 55 9 59 2.44 4.13
1pfsA00 78.20 DNA-Binding protein G5PPseudomonas phage Pf3 2.40.50.140 78 12 73 3.45 4.72
1bcoA02 77.62 TransposaseEnterobacteria phage Mu 2.30.30.130 68 6 83 4.16 4.96
1ckaA00 76.61 Pathways in cancerChemokine signaling pathwayNeurotrophin signaling pathwayFc gamma R-mediated phagocytosisErbB signaling pathway 2.30.30.40 56 5 53 2.01 3.79
2v1qA00 76.54 Actin cortical patch assemblyMating projection tipIdentical protein bindingNucleusActin filament organization 2.30.30.40 60 6 56 2.12 3.78
1vq8A01 74.39 Ribosome50S ribosomal protein L2PHaloarcula marismortuiLarge subunit ribosomal protein L2 2.40.50.140 78 10 48 2.32 4.76
1jegA00 74.30 Tyrosine-protein kinase CSKProtein bindingCell-cell junctionMus musculusATP binding 2.30.30.40 60 5 56 2.30 4.10
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Displaying entries 1 to 36 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2awnB02
MNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEPPERCHLFREDGTACR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2awnB02
MNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEPPERCHLFREDGTACR
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:44

Assigning to "2.40.50.100" based on similarity with "1q1eB03" (NWSI: 100, NWO: 100, SPS: 96.19, SPO: 100, RMSD: 0.84)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "2awnB02"

Flow stage update by auto on 28 Apr 2006 17:49

All required files are present for Domain "2awnB02"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2awnB02"

Insertion by auto on 10 Mar 2006 18:42

Final ChopClose added based on similarity with "1q12A" [LEE: 5, LME: 0, MR: 0, LG: 5, SS: 91.54, SI: 100, SO: 100]