CATH Domain: 2aprA01 XML data for domain: 2aprA01

Molscript image for 2aprA01
2aprA01
PDB coordinates for domain 2aprA01

PDB 2apr, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.3
2.40.70.10.3.3
2.40.70.10.3.3.1
2.40.70.10.3.3.1.1
2.40.70.10.3.3.1.1.1

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Segment boundaries for domain 2aprA01

Chopping figure for domain 2aprA01
DomainStart PDB ResidueStop PDB Residue
2aprA01 6 174
2aprA02 175 323

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.40.70.10.3.3.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wkrA01 87.58 Irpex lacteusPolyporopepsin 2.40.70.10 170 26 86 1.81 2.09
1mppA01 87.34 Rhizomucor pusillusMucorpepsin 2.40.70.10 181 30 89 1.88 2.10
1j71A01 85.98 Candida tropicalisCandidapepsin 2.40.70.10 173 22 87 2.07 2.36
1pfzB01 83.84 Plasmepsin II [EC:3.4.23.39]Plasmepsin-2Plasmodium falciparum 2.40.70.10 155 20 86 2.07 2.41
1b5fC00 82.01 Preprocardosin ACynara cardunculus 2.40.70.10 238 26 65 1.59 2.44
1t6eX01 78.32 Triticum aestivumXylanase inhibitor 2.40.70.10 174 16 76 2.88 3.77
1lyaA00 77.17 LysosomeAspartic-type endopeptidase activityCathepsin D [EC:3.4.23.5]Homo sapiensCathepsin D 2.40.70.10 97 25 52 1.94 3.68
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2aprA01
VPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDGSSASG
ILAKDNVNLGGLLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGG
GGEYIFGGY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2aprA01
VPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDGSSASG
ILAKDNVNLGGLLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGG
GGEYIFGGY
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "2apr001" to "2aprA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:53

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"