CATH Domain: 2apcA01

2apcA01

PDB 2apc, Chain A, Domain 1

CATH Code	Level Description	Links
3	Alpha Beta
3.90	Alpha-Beta Complex
3.90.550	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
3.90.550.10	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	Gene3D
3.90.550.10.9
3.90.550.10.9.1
3.90.550.10.9.1.1
3.90.550.10.9.1.1.1
3.90.550.10.9.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2apcA01

Domain	Start PDB Residue	Stop PDB Residue
2apcA01	106	331
2apcA02	367	446

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.

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Domain ATOM Sequence

>pdb|2apcA01
AVIPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY
KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVDSSKPELLYRTDF
FPGLGWLLLAELWAELEPKWPKAFWDDWMRRPEQRKGRACVRPEISRTMTFGRKGVSHGQFFDQHL

BLAST against CATH

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Domain COMBS Sequence

>pdb|2apcA01
AVIPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY
KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVDSSKPELLYRTDF
FPGLGWLLLAELWAELEPKWPKAFWDDWMRRPEQRKGRACVRPEISRTMTFGRKGVSHGQFFDQHL

BLAST against CATH

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Domain History Events (13)

Domain assigned by auto on 02 Nov 2006 03:35

Assigning to "3.90.550.10" based on similarity with "1fo8A01"

Flow stage update by auto on 02 Nov 2006 03:17

No in_process hits for Domain "2apcA01" ready to be processed

Update comment by auto on 01 Nov 2006 21:56

Domain "2apcA01" hits Domain "2am4A01" (100% over 100%) which is currently in process