Domain assigned by cuff on 07 Feb 2008 16:39
enough evidence for homology here
CATH Domain: 2aklA01
2aklA01
PDB 2akl, Chain A, Domain 1
| CATH Code | Level Description | Links |
|---|---|---|
 2
| Mainly Beta | |
 2.20
| Single Sheet | |
 2.20.25
| N-terminal domain of TfIIb | |
 2.20.25.10
| Gene3D | |
 2.20.25.10.21
| ||
 2.20.25.10.21.1
| ||
 2.20.25.10.21.1.1
| ||
 2.20.25.10.21.1.1.1
| ||
 2.20.25.10.21.1.1.1.1
|
Segment boundaries for domain 2aklA01
| Domain | Start PDB Residue | Stop PDB Residue |
|---|---|---|
| 2aklA01 | 1 | 43 |
| 2aklA02 | 44 | 116 |
Structural Neighbourhood (1 entries)
There are 1 matching structural neighberhood comparisons for CATH ID 2.20.25.10.21.1.1.1.1 (SIMAX score < 5)
[1]
Displaying entries 1 to 1 (page 1 of 1)
| Match Depth | Match | SSAP score | Match Keywords | Match Superfamily | Length | Sequence Id | Overlap | RMSD | SIMAX |
|---|---|---|---|---|---|---|---|---|---|
|
1irxA02 | 76.00 | 2.30.30.300 | 43 | 11 | 83 | 3.71 | 4.43 |
[1]
Displaying entries 1 to 1 (page 1 of 1)
Domain History Events (264)
Domain scan prc pfamcath by auto on 25 Sep 2007 12:19
Adding scan of type "DOMAIN_SCAN_PRC_PFAMCATH" with 20 results for 2aklA01
Homcheck comment by rupa on 11 Sep 2007 14:56
After further review, this still appears to be the most appropriate choice.
Domain assignment manual match h by rupa on 21 Aug 2007 12:10
Very high cathedral and ssap scores, and same folding. Both may be involved in transcription
Homcheck review by rupa on 21 Aug 2007 12:10
Very high cathedral and ssap scores, and same folding. Both may be involved in transcription
Flow stage update by rupa on 21 Aug 2007 12:10
Very high cathedral and ssap scores, and same folding. Both may be involved in transcription
Homcheck allotment by rupa on 21 Aug 2007 12:07
User 'rupa' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by rupa on 21 Aug 2007 12:07
User 'rupa' has allocated a domain to themselves for HomChecking with comment : Grabbed this domain via HomCheck's "Get Me A Domain" button.
Flow stage update by auto on 21 Aug 2007 12:00
Domain "2aklA01" SCOP scan with no results - no SCOP mapping
Domain scan scop cath by auto on 21 Aug 2007 12:00
Adding scan of type "DOMAIN_SCAN_SCOP_CATH" with 0 results for 2aklA01
Flow stage update by auto on 21 Aug 2007 11:44
Retrieved PRC_PFAMCATH results for job ID SID7123042855161856 and results inserted.
Update comment by auto on 19 Aug 2007 11:06
PRC_PFAMCATH job SID7123042855161856 is not yet finished.
Prc pfamcath submit by auto on 19 Aug 2007 11:04
The entry "2aklA01" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 19 Aug 2007 11:04
The entry "2aklA01" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 19 Aug 2007 08:34
Giving up on PRC_PFAMCATH job SID1981340304370024 because submission time of Fri Aug 17 04:26:22 2007 is more than 172800 seconds older than current time (Sun Aug 19 08:34:55 2007).
Update comment by auto on 17 Aug 2007 04:27
PRC_PFAMCATH job SID1981340304370024 is not yet finished.
Prc pfamcath submit by auto on 17 Aug 2007 04:26
The entry "2aklA01" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 17 Aug 2007 04:26
The entry "2aklA01" has been submitted to the PRC_PFAMCATH webservice.
Flow stage update by auto on 17 Aug 2007 03:04
Retrieved SSAP results for job ID SID7568548240665132 and chopping inserted.
Domain scan ssap cath by auto on 17 Aug 2007 03:03
Adding scan of type "DOMAIN_SCAN_SSAP_CATH" with 610 results for 2aklA01
Update comment by auto on 16 Aug 2007 23:33
SSAP job SID7568548240665132 is not yet finished.
Flow stage update by auto on 16 Aug 2007 22:29
The entry "2aklA01" has been submitted to the SSAP webservice.
Ssap cath submit by auto on 16 Aug 2007 22:29
The entry "2aklA01" has been submitted to the SSAP webservice.
Flow stage update by auto on 16 Aug 2007 17:25
Giving up on SSAP job SID9818722776473632 because submission time of Tue Aug 14 08:09:06 2007 is more than 172800 seconds older than current time (Thu Aug 16 17:25:06 2007).
Update comment by auto on 14 Aug 2007 09:46
SSAP job SID9818722776473632 is not yet finished.
Ssap cath submit by auto on 14 Aug 2007 08:09
The entry "2aklA01" has been submitted to the SSAP webservice.
Flow stage update by auto on 14 Aug 2007 08:09
The entry "2aklA01" has been submitted to the SSAP webservice.
Flow stage update by auto on 14 Aug 2007 00:45
Retrieved PRC results for job ID SID4863911343001056 and inserted them into the database.
Domain scan prc cath by auto on 14 Aug 2007 00:44
Adding scan of type "DOMAIN_SCAN_PRC_CATH" with 2 results for 2aklA01
Flow stage update by auto on 13 Aug 2007 09:10
The entry "2aklA01" has been submitted to the PRC webservice.
Prc cath submit by auto on 13 Aug 2007 09:10
The entry "2aklA01" has been submitted to the PRC webservice.
Flow stage update by auto on 13 Aug 2007 02:40
Retrieved HMM(SAM) results for job ID SID7139471650283720 and inserted them into the database.
Domain scan sam cath by auto on 13 Aug 2007 02:39
Adding scan of type "DOMAIN_SCAN_SAM_CATH" with 1 results for 2aklA01
Update comment by auto on 12 Aug 2007 12:26
HMM(SAM) job SID7139471650283720 is not yet finished.
Sam cath submit by auto on 12 Aug 2007 06:12
The entry "2aklA01" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 12 Aug 2007 06:12
The entry "2aklA01" has been submitted to the HMM (SAM) webservice.
Flow stage update by auto on 11 Aug 2007 19:30
Retrieved "2aklA01" CATHEDRAL results for job ID SID1814189564988384 and inserted them into the database.
Domain scan cathedral cath by auto on 11 Aug 2007 19:30
Adding scan of type "DOMAIN_SCAN_CATHEDRAL_CATH" with 122 results for 2aklA01
Update comment by auto on 11 Aug 2007 05:05
"2aklA01" CATHEDRAL job SID1814189564988384 is not yet finished.
Cathedral cath submit by auto on 11 Aug 2007 03:18
The entry "2aklA01" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 11 Aug 2007 03:18
The entry "2aklA01" has been submitted to the CATHEDRAL webservice.
Flow stage update by auto on 11 Aug 2007 00:07
ScanList with 9778 domains written to "/cath/data/current/scanlists/cathdb_current.fletcher/2aklA01.scanlist" for "2aklA01"
Write scan list by auto on 11 Aug 2007 00:07
Writing ScanList containing 9778 domains to file "/cath/data/current/scanlists/cathdb_current.fletcher/2aklA01.scanlist" for domain "2aklA01"
Update comment by auto on 10 Aug 2007 14:28
Waiting for 984 new domains (example : 1h4uA00) to be processed so that they can be scanned against too.
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Waiting for 8152 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 17 Jul 2007 03:06
Waiting for 8083 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 22:52
Waiting for 8009 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 19:10
Waiting for 7928 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 15:27
Waiting for 7841 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 10:51
Waiting for 7749 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 06:35
Waiting for 7631 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 04:39
Waiting for 7496 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 16 Jul 2007 01:11
Waiting for 7325 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 22:49
Waiting for 7146 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 19:32
Waiting for 6928 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 15:24
Waiting for 6694 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 11:50
Waiting for 6438 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 07:19
Waiting for 6152 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 15 Jul 2007 03:24
Waiting for 5796 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Jul 2007 23:12
Waiting for 5384 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Jul 2007 21:14
Waiting for 4906 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Jul 2007 18:05
Waiting for 4380 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Jul 2007 13:00
Waiting for 3708 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 14 Jul 2007 06:08
Waiting for 2933 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 13 Jul 2007 18:58
Waiting for 1961 new domains (example : 1ai6A01) to be processed so that they can be scanned against too.
Update comment by auto on 12 Jul 2007 16:12
Waiting for 1013 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 12 Jul 2007 14:09
Waiting for 1040 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 12 Jul 2007 12:26
Waiting for 1062 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 12 Jul 2007 10:03
Waiting for 1110 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 12 Jul 2007 08:03
Waiting for 1159 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 12 Jul 2007 06:03
Waiting for 1205 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 12 Jul 2007 04:03
Waiting for 1240 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 12 Jul 2007 02:08
Waiting for 1265 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 12 Jul 2007 00:12
Waiting for 1270 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 11 Jul 2007 22:06
Waiting for 1282 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 11 Jul 2007 20:10
Waiting for 1285 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 11 Jul 2007 18:08
Waiting for 1276 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 11 Jul 2007 16:10
Waiting for 1258 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 11 Jul 2007 14:06
Waiting for 1144 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 11 Jul 2007 12:07
Waiting for 1163 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 11 Jul 2007 10:04
Waiting for 1196 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 11 Jul 2007 08:04
Waiting for 1231 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 11 Jul 2007 06:05
Waiting for 1257 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 11 Jul 2007 04:03
Waiting for 1280 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 11 Jul 2007 00:05
Waiting for 1308 new domains (example : 1u0rA01) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 22:01
Waiting for 1315 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 20:01
Waiting for 1304 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 18:04
Waiting for 1290 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 16:04
Waiting for 1275 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 14:05
Waiting for 1248 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 12:07
Waiting for 1207 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 10:11
Waiting for 1071 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 08:11
Waiting for 1065 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 06:10
Waiting for 1055 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 04:11
Waiting for 1045 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 02:22
Waiting for 1027 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 10 Jul 2007 00:34
Waiting for 1000 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 09 Jul 2007 22:22
Waiting for 958 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 09 Jul 2007 19:13
Waiting for 910 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 09 Jul 2007 14:57
Waiting for 810 new domains (example : 1bdg001) to be processed so that they can be scanned against too.
Update comment by auto on 07 Jul 2007 18:05
Waiting for 596 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 07 Jul 2007 16:03
Waiting for 594 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 07 Jul 2007 14:03
Waiting for 592 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 07 Jul 2007 12:02
Waiting for 590 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 07 Jul 2007 10:14
Waiting for 588 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 07 Jul 2007 08:14
Waiting for 583 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 07 Jul 2007 06:16
Waiting for 578 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 07 Jul 2007 04:16
Waiting for 572 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 07 Jul 2007 02:17
Waiting for 564 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 07 Jul 2007 00:17
Waiting for 556 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 06 Jul 2007 22:12
Waiting for 548 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 06 Jul 2007 20:17
Waiting for 536 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 06 Jul 2007 18:18
Waiting for 517 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 06 Jul 2007 16:22
Waiting for 483 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 06 Jul 2007 14:27
Waiting for 439 new domains (example : 1mt2001) to be processed so that they can be scanned against too.
Update comment by auto on 06 Jul 2007 11:14
Waiting for 101 new domains (example : 2a9vD00) to be processed so that they can be scanned against too.
Update comment by auto on 06 Jul 2007 10:03
Waiting for 100 new domains (example : 2a9vD00) to be processed so that they can be scanned against too.
Update comment by auto on 06 Jul 2007 08:37
Waiting for 111 new domains (example : 2a9vD00) to be processed so that they can be scanned against too.
Update comment by auto on 06 Jul 2007 04:58
Waiting for 188 new domains (example : 2a9vD00) to be processed so that they can be scanned against too.
Update comment by auto on 06 Jul 2007 00:57
Waiting for 268 new domains (example : 2a9vD00) to be processed so that they can be scanned against too.
Update comment by auto on 05 Jul 2007 22:28
Waiting for 290 new domains (example : 2a9vD00) to be processed so that they can be scanned against too.
Update comment by auto on 05 Jul 2007 20:31
Waiting for 311 new domains (example : 2a9vD00) to be processed so that they can be scanned against too.
Update comment by auto on 05 Jul 2007 18:42
Waiting for 324 new domains (example : 2a9vD00) to be processed so that they can be scanned against too.
Flow stage update by auto on 05 Jul 2007 18:41
No satisfactory AssignClose result found.
Flow stage update by auto on 05 Jul 2007 18:38
No in_process hits for Domain "2aklA01" ready to be processed
Flow stage update by auto on 05 Jul 2007 18:38
NW result present for Domain "2aklA01"
Flow stage update by auto on 04 Jul 2007 22:02
All required files are present for Domain "2aklA01"
Flow stage update by auto on 04 Jul 2007 14:59
Beginning processing for Domain "2aklA01"
Insertion by cuff on 04 Jul 2007 13:10
nice chopping to go
