CATH Domain: 2ahfA00

2ahfA00

PDB 2ahf, Chain A, Domain 0

CATH Code	Level Description	Links
1	Mainly Alpha
1.50	Alpha/alpha barrel
1.50.10	Glycosyltransferase
1.50.10.10		Gene3D
1.50.10.10.5
1.50.10.10.5.1
1.50.10.10.5.1.1
1.50.10.10.5.1.1.1
1.50.10.10.5.1.1.1.1

Structure
Sequence
History

[top]
Segment boundaries for domain 2ahfA00

Domain	Start PDB Residue	Stop PDB Residue
2ahfA00	1	377

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 1.50.10.10.5.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	1g9gA01	75.53	Clostridium cellulolyticum H10Endoglucanase F	1.50.10.10	425	8	76	3.72	4.85

[top]
Domain ATOM Sequence

>pdb|2ahfA00
MWQQAIGDALGITARNLKKFGDRFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYEYTGDEQYREGAVRTVASFRERLDR
FENLDHHNIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWA
GEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNA
DLLETAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDG
YAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEALLRLERGVTGYWYERGR

BLAST against CATH

[top]
Domain COMBS Sequence

>pdb|2ahfA00
MWQQAIGDALGITARNLKKFGDRFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYEYTGDEQYREGAVRTVASFRERLDR
FENLDHHNIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWA
GEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNA
DLLETAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDG
YAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEALLRLERGVTGYWYERGR

BLAST against CATH

[top]
Domain History Events (13)

Domain assigned by auto on 02 Nov 2006 03:34

Assigning to "1.50.10.10" based on similarity with "2ahfB00"

Flow stage update by auto on 02 Nov 2006 03:17

No in_process hits for Domain "2ahfA00" ready to be processed

Update comment by auto on 01 Nov 2006 21:56

Domain "2ahfA00" hits Domain "2ahfB00" (100% over 100%) which is currently in process