CATH Domain: 2afbB00 XML data for domain: 2afbB00

Molscript image for 2afbB00
2afbB00
PDB coordinates for domain 2afbB00

PDB 2afb, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.1190 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
3.40.1190.20 Gene3D
3.40.1190.20.19
3.40.1190.20.19.1
3.40.1190.20.19.1.1
3.40.1190.20.19.1.1.1
3.40.1190.20.19.1.1.1.1

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Segment boundaries for domain 2afbB00

Chopping figure for domain 2afbB00
DomainStart PDB ResidueStop PDB Residue
2afbB00 0 331

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.40.1190.20.19.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tyyB00 82.93 Amino sugar and nucleotide sugar metabolismStarch and sucrose metabolismFructose and mannose metabolismMetabolic pathwaysFructokinase [EC:2.7.1.4] 3.40.1190.20 292 17 87 2.65 3.03
2ajrA01 76.27 Thermotoga maritima1-phosphofructokinase [EC:2.7.1.56]Fructose and mannose metabolismSugar kinase, pfkB family 3.40.1190.20 259 16 78 3.68 4.71
1ub0A00 76.22 TransferaseThiamine metabolismHydroxymethylpyrimidine kinase [EC:2.7.1.49]Phosphomethylpyrimidine kinase [EC:2.7.4.7]Metabolic pathways 3.40.1190.20 246 12 71 3.10 4.36
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2afbB00
HKVVTFGEILRLSPPDHKRIFQTDSFDVTYGGAEANVAAFLAQGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIARGG
NRIGIYFLEIGASQRPSKVVYDRAHSAISEAKREDFDWEKILDGARWFHFSGITPPLGKELPLILEDALKVANEKGVTVS
CDLNYRARLWTKEEAQKVIPFEYVDVLIANEEDIEKVLGISVEGLDNREAYAKIAEEVTRKYNFKTVGITLRESISATVN
YWSVVFENGQPHFSNRYEIHIVDRVGAGDSFAGALIYGSLGFDSQKKAEFAAAASCLKHTIPGDFVVLSIEEIEKLASG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2afbB00
XGSDKIHHHHHHXKVVTFGEIXLRLSPPDHKRIFQTDSFDVTYGGAEANVAAFLAQXGLDAYFVTKLPNNPLGDAAAGHL
RKFGVKTDYIARGGNRIGIYFLEIGASQRPSKVVYDRAHSAISEAKREDFDWEKILDGARWFHFSGITPPLGKELPLILE
DALKVANEKGVTVSCDLNYRARLWTKEEAQKVXIPFXEYVDVLIANEEDIEKVLGISVEGLDLKTGKLNREAYAKIAEEV
TRKYNFKTVGITLRESISATVNYWSVXVFENGQPHFSNRYEIHIVDRVGAGDSFAGALIYGSLXGFDSQKKAEFAAAASC
LKHTIPGDFVVLSIEEIEKLASGATSGRVER
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:33

Assigning to "3.40.1190.20" based on similarity with "1j5vA00" (NWSI: 97.7207977207977, NWO: 100, SPS: 96.90, SPO: 98, RMSD: 0.34)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "2afbB00"

Flow stage update by auto on 28 Apr 2006 17:48

All required files are present for Domain "2afbB00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2afbB00"

Insertion by auto on 17 Mar 2006 19:06

Final ChopClose added based on similarity with "1j5vA" [LEE: 1, LME: 0, MR: 2, LG: 5, SS: 96.90, SI: 97.7207977207977, SO: 100]