CATH Domain: 2absA01 XML data for domain: 2absA01

Molscript image for 2absA01
2absA01
PDB coordinates for domain 2absA01

PDB 2abs, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.1190 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
3.40.1190.20 Gene3D
3.40.1190.20.1
3.40.1190.20.1.1
3.40.1190.20.1.1.1
3.40.1190.20.1.1.1.1
3.40.1190.20.1.1.1.1.1

Segment boundaries for domain 2absA01

Chopping figure for domain 2absA01
DomainStart PDB ResidueStop PDB Residue
2absA01 11 21
2absA01 67 124
2absA01 142 356
2absA02 22 66
2absA02 125 141

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 3.40.1190.20.1.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1bx4A01 89.60 Ribonucleoside monophosphate biosynthetic processHomo sapiensAdenosine kinaseAdenosine kinase activity 3.40.1190.20 279 31 94 1.94 2.04
1rkdA00 83.98 Pentose phosphate pathwayD-ribose catabolic processRibokinase activityRibokinaseRibokinase [EC:2.7.1.15] 3.40.1190.20 306 19 79 2.49 3.14
2fv7A00 83.95 Pentose phosphate pathwayRibokinaseRibokinase [EC:2.7.1.15]Homo sapiens 3.40.1190.20 308 19 79 2.41 3.02
2qhpA00 83.66 Fructokinase [EC:2.7.1.4]Amino sugar and nucleotide sugar metabolismStarch and sucrose metabolismBacteroides thetaiotaomicronFructokinase 3.40.1190.20 275 15 87 2.54 2.90
2qcvA01 83.55 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]Bacillus haloduransInositol phosphate metabolismMetabolic pathways5-dehydro-2-deoxygluconokinase 3.40.1190.20 262 19 86 2.93 3.39
1tyyB00 83.35 Amino sugar and nucleotide sugar metabolismStarch and sucrose metabolismFructose and mannose metabolismMetabolic pathwaysFructokinase [EC:2.7.1.4] 3.40.1190.20 292 18 82 2.48 2.99
1v1aA00 83.24 Thermus thermophilus HB82-dehydro-3-deoxygluconokinase [EC:2.7.1.45]Pentose and glucuronate interconversionsPentose phosphate pathway2-keto-3-deoxy-gluconate kinase 3.40.1190.20 301 19 80 2.30 2.86
2rbcA00 82.33 Sugar kinaseAgrobacterium tumefaciens str. C58 3.40.1190.20 297 16 79 2.51 3.16
2nwhA00 81.19 Agrobacterium tumefaciens str. C58Carbohydrate kinase 3.40.1190.20 303 15 75 2.54 3.35
2afbB00 81.00 Thermotoga maritima2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]Pentose phosphate pathwayPentose and glucuronate interconversions2-keto-3-deoxygluconate kinase 3.40.1190.20 319 17 76 2.38 3.11
2abqA00 80.61 Fructose 1-phosphate kinase1-phosphofructokinase [EC:2.7.1.56]Fructose and mannose metabolismBacillus halodurans 3.40.1190.20 302 14 77 3.14 4.04
1vk4A00 80.22 Thermotoga maritimaPutative uncharacterized protein 3.40.1190.20 276 9 83 3.09 3.69
2ajrA01 79.48 Thermotoga maritima1-phosphofructokinase [EC:2.7.1.56]Fructose and mannose metabolismSugar kinase, pfkB family 3.40.1190.20 259 12 85 3.29 3.85
3bf5A01 79.37 Pentose phosphate pathwayRibokinase [EC:2.7.1.15]Thermoplasma acidophilumRibokinase related protein 3.40.1190.20 221 15 75 3.14 4.18
1esjA00 77.20 Thiamine metabolismBacillus subtilisHydroxyethylthiazole kinase [EC:2.7.1.50]Metabolic pathwaysHydroxyethylthiazole kinase 3.40.1190.20 284 11 73 3.20 4.33
3drwB01 75.72 Pyrococcus horikoshiiADP-specific phosphofructokinaseADP-specific phosphofructokinase [EC:2.7.1.146] 3.40.1190.20 330 10 68 3.35 4.87
2r3bA01 75.39 YjeF-related proteinEnterococcus faecalis 3.40.1190.20 266 10 78 3.76 4.77
Displaying entries 1 to 17 (page 1 of 1)


Domain ATOM Sequence

>pdb|2absA01
GPMRVFAIGNPPGGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTLGACGSFRLPE
DWTTFASGALIFYATAYTLTATPKNALEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAK
VHNLVNKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVDTNGAGDAFVG
GFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSL    

Domain COMBS Sequence

>pdb|2absA01
GPMRVFAIGNPPGGSALNSVRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTLGACGSFRLPE
DWTTFASGALIFYATAYTLTATPKNALEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLLHTNILFGNEEEFAHLAK
VHNLVAAEKTALSTANKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAAEQTADGTVVVHEVGVPVVAAEKIVD
TNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFSL    

Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:31

Assigning to "3.40.1190.20" based on similarity with "1dgmA01" (NWSI: 97.9381443298969, NWO: 96.6777408637874, SPS: 96.12, SPO: 99, RMSD: 0.72)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "2absA01"

Flow stage update by auto on 28 Apr 2006 17:48

All required files are present for Domain "2absA01"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2absA01"

Insertion by auto on 15 Mar 2006 02:04

Final ChopClose added based on similarity with "1dgmA" [LEE: 0, LME: 0, MR: 4, LG: 4, SS: 95.39, SI: 98.3050847457627, SO: 97.5206611570248]