CATH Domain: 2ab5B01 XML data for domain: 2ab5B01

Molscript image for 2ab5B01
2ab5B01
PDB coordinates for domain 2ab5B01

PDB 2ab5, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.28 Endonuclease I-creI
3.10.28.10 Homing endonucleases Gene3D
3.10.28.10.2
3.10.28.10.2.1
3.10.28.10.2.1.1
3.10.28.10.2.1.1.1
3.10.28.10.2.1.1.1.1

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Segment boundaries for domain 2ab5B01

Chopping figure for domain 2ab5B01
DomainStart PDB ResidueStop PDB Residue
2ab5B01 256 383
2ab5B02 384 517

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.10.28.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1t9iA00 82.31 Chlamydomonas reinhardtiiDNA endonuclease I-CreI 3.10.28.10 153 12 74 2.26 3.03
2fldA00 81.78 Monomastix sp. OKE-1Site-specific DNA endonuclease I-MsoI 3.10.28.10 161 14 70 2.30 3.28
1dq3A03 76.57 Pyrimidine metabolismPyrococcus furiosusPurine metabolismRibonucleoside-diphosphate reductaseRibonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 3.10.28.10 87 12 62 2.90 4.61
2vs7A02 76.38 Desulfurococcus mobilisHoming endonuclease I-DmoI 3.10.28.10 78 16 58 2.54 4.37
2vs7D02 74.96 Desulfurococcus mobilisHoming endonuclease I-DmoI 3.10.28.10 87 14 65 3.19 4.88
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2ab5B01
HKLNTDNPIYAYIVGLFEGDGWITISKKGKYLLYELGIEHIRDIQLLYKIKNILGIGKVTIKKLKKDGTIKECKFNVRNK
NHLKNIIIPIFNKYPLTNKHYDYLYFKDNLLKDIKYYNDLSYYL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2ab5B01
MGHHHHHHKLNTDNPIYAYIVGLFEGDGWITISKKGKYLLYELGIEXHIRDIQLLYKIKNILGIGKVTIKKLKXKDGTIK
EXCKFNVRNKNHLKNIIIPIFNKYPXLTNKHYDYLYFKDNLLKDIKYYNDLSYYL
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 30 Nov 2006 13:30

Assigning to "3.10.28.10" based on similarity with "2ab5A01"

Flow stage update by auto on 30 Nov 2006 13:27

No in_process hits for Domain "2ab5B01" ready to be processed

Flow stage update by auto on 30 Nov 2006 13:27

NW result present for Domain "2ab5B01"

Flow stage update by auto on 29 Nov 2006 13:24

All required files are present for Domain "2ab5B01"

Flow stage update by auto on 28 Nov 2006 18:21

Beginning processing for Domain "2ab5B01"

Insertion by auto on 28 Nov 2006 17:55

Final ChopClose added based on similarity with "2ab5A"