CATH Domain: 2a4dA00 XML data for domain: 2a4dA00

Molscript image for 2a4dA00
2a4dA00
PDB coordinates for domain 2a4dA00

PDB 2a4d, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.110 Ubiquitin Conjugating Enzyme
3.10.110.10 Ubiquitin Conjugating Enzyme Gene3D
3.10.110.10.5
3.10.110.10.5.1
3.10.110.10.5.1.1
3.10.110.10.5.1.1.1
3.10.110.10.5.1.1.1.1

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Segment boundaries for domain 2a4dA00

Chopping figure for domain 2a4dA00
DomainStart PDB ResidueStop PDB Residue
2a4dA00 82 220

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.10.110.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1br7003 86.51 3.10.110.10 117 28 83 2.79 3.34
2e2cA00 84.75 Ubiquitin-conjugating enzyme E2 CSpisula solidissima 3.10.110.10 156 24 83 4.06 4.87
3h8kA00 83.86 Parkinson's diseaseUbiquitin mediated proteolysisUbiquitin-conjugating enzyme E2 G2 [EC:6.3.2.19]Homo sapiensProtein binding 3.10.110.10 164 18 77 2.71 3.50
1wzvA00 82.14 Parkinson's diseaseUbiquitin-conjugating enzyme E2 L6 [EC:6.3.2.19]Homo sapiensUbiquitin mediated proteolysisProtein binding 3.10.110.10 150 20 84 3.44 4.10
1s1qA00 80.83 EndocytosisMultivesicular bodyPlasma membraneNucleolusTumor susceptibility gene 101 protein 3.10.110.10 137 13 84 3.85 4.54
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2a4dA00
GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK
INMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2a4dA00
GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK
INMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:27

Assigning to "3.10.110.10" based on similarity with "1j7dA00" (NWSI: 91.4285714285714, NWO: 96.551724137931, SPS: 96.19, SPO: 99, RMSD: 2.68)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "2a4dA00"

Flow stage update by auto on 28 Apr 2006 17:48

All required files are present for Domain "2a4dA00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2a4dA00"

Insertion by auto on 10 Mar 2006 14:45

Final ChopClose added based on similarity with "1j74A" [LEE: 1, LME: 0, MR: 1, LG: 1, SS: 96.87, SI: 89.6551724137931, SO: 90.625]