CATH Domain: 2a40B00 XML data for domain: 2a40B00

Molscript image for 2a40B00
2a40B00
PDB coordinates for domain 2a40B00

PDB 2a40, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.10 Deoxyribonuclease I; Chain A
3.60.10.10 Gene3D
3.60.10.10.4
3.60.10.10.4.1
3.60.10.10.4.1.1
3.60.10.10.4.1.1.1
3.60.10.10.4.1.1.1.1

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Segment boundaries for domain 2a40B00

Chopping figure for domain 2a40B00
DomainStart PDB ResidueStop PDB Residue
2a40B00 1 260

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.60.10.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vybA00 79.27 Homo sapiensPutative uncharacterized protein 3.60.10.10 236 13 81 3.13 3.86
1hd7A00 79.00 Metal ion bindingUracil DNA N-glycosylase activityDNA-(apurinic or apyrimidinic site) lyaseAP endonuclease 1 [EC:4.2.99.18]Perinuclear region of cytoplasm 3.60.10.10 259 14 75 3.20 4.23
2f1nA00 77.95 Escherichia coliCytolethal distending toxin subunit B 3.60.10.10 252 12 85 3.92 4.59
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|2a40B00
LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERY
LFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHL
NDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDSADTTATSTNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYG
LSNEMALAISDHYPVEVTLT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|2a40B00
LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERY
LFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHL
NDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDSADTTATSTNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYG
LSNEMALAISDHYPVEVTLT
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:27

Assigning to "3.60.10.10" based on similarity with "1dnkA00" (NWSI: 100, NWO: 100, SPS: 95.97, SPO: 96, RMSD: 0.36)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "2a40B00"

Flow stage update by auto on 28 Apr 2006 17:48

All required files are present for Domain "2a40B00"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "2a40B00"

Insertion by auto on 10 Mar 2006 14:40

Final ChopClose added based on similarity with "1dnkA" [LEE: 0, LME: 0, MR: 0, LG: 10, SS: 95.97, SI: 100, SO: 100]