CATH Domain: 2a2kA00

2a2kA00

PDB 2a2k, Chain A, Domain 0

CATH Code	Level Description	Links
3	Alpha Beta
3.40	3-Layer(aba) Sandwich
3.40.250	Oxidized Rhodanese; domain 1
3.40.250.10	Oxidized Rhodanese, domain 1	Gene3D
3.40.250.10.10
3.40.250.10.10.1
3.40.250.10.10.1.1
3.40.250.10.10.1.1.1
3.40.250.10.10.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 2a2kA00

Domain	Start PDB Residue	Stop PDB Residue
2a2kA00	376	550

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.250.10.10.1.1.1.1 (SIMAX score < 5)

Match Depth	Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
	1e0cA02	78.53	Azotobacter vinelandiiThiosulfate sulfurtransferaseThiosulfate sulfurtransferase [EC:2.8.1.1]	3.40.250.10	126	19	59	2.98	5.00

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Domain ATOM Sequence

>pdb|2a2kA00
MELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK
SPIAPKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDE
LKTFRLKTRSW

BLAST against CATH

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Domain COMBS Sequence

>pdb|2a2kA00
MELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK
SPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEA
FKDELKTFRLKTRSW

BLAST against CATH

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Domain History Events (15)

Domain assigned by auto on 02 Nov 2006 10:12

Assigning to "3.40.250.10" based on similarity with "1ym9A00"

Flow stage update by auto on 02 Nov 2006 10:06

No in_process hits for Domain "2a2kA00" ready to be processed

Update comment by auto on 02 Nov 2006 06:12

Domain "2a2kA00" hits Domain "1ys0A00" (99.4285714285714% over 100%) which is currently in process

Update comment by auto on 02 Nov 2006 03:17

Domain "2a2kA00" hits Domain "1ymkA00" (99.4285714285714% over 100%) which is currently in process

Update comment by auto on 01 Nov 2006 21:56

Domain "2a2kA00" hits Domain "1ymlA00" (99.4285714285714% over 100%) which is currently in process