CATH Domain: 1zud400 XML data for domain: 1zud400

Molscript image for 1zud400
1zud400
PDB coordinates for domain 1zud400

PDB 1zud, Chain 4, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.19
3.10.20.30.19.1
3.10.20.30.19.1.1
3.10.20.30.19.1.1.1
3.10.20.30.19.1.1.1.1

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Segment boundaries for domain 1zud400

Chopping figure for domain 1zud400
DomainStart PDB ResidueStop PDB Residue
1zud400 1 66

Structural Neighbourhood (34 entries)

There are 34 matching structural neighberhood comparisons for CATH ID 3.10.20.30.19.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 34 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tygB00 90.81 Sulfur carrier protein ThiSThiamine biosynthesis ThiSBacillus subtilis 3.10.20.30 65 16 96 1.69 1.74
1ryjA00 86.45 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 3.10.20.30 70 24 88 1.97 2.22
1yqbA01 82.73 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 16 85 3.44 4.00
2kd0A01 82.57 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 16 85 3.18 3.70
1wh3A01 82.31 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 15 85 3.43 3.99
1wxmA01 81.26 Bladder cancerPathways in cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 9 81 2.79 3.42
1wm3A00 81.24 Small ubiquitin-related modifierHomo sapiensSmall ubiquitin-related modifier 2Protein sumoylationProtein binding 3.10.20.90 72 12 84 3.79 4.47
2zeqA00 81.12 Synaptic transmission, glutamatergicLearningAdult locomotory behaviorParkinson's diseaseDopamine metabolic process 3.10.20.90 78 7 84 3.44 4.07
2bwfA00 81.09 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 19 77 3.07 3.94
1m94A00 80.34 Ubiquitin-like protein 5Protein modification processProtein bindingNuclear mRNA splicing, via spliceosomeMating projection 3.10.20.90 73 12 84 3.88 4.57
1wx9A00 79.91 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 16 72 3.02 4.19
1rwsA00 79.90 Pyrococcus furiosusPutative uncharacterized protein 3.10.20.30 68 21 91 4.15 4.55
2gbjB00 79.78 3.10.20.90 84 13 78 3.50 4.45
1wywB00 79.77 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein bindingProtein sumoylation 3.10.20.90 79 12 83 3.80 4.55
3a4rA00 79.69 Mus musculusNFATC2-interacting proteinRegulation of transcription, DNA-dependentCytokine production 3.10.20.90 79 6 77 3.86 5.00
1c1yB00 79.56 RAF proto-oncogene serine/threonine-protein kinaseNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathwayProtein binding 3.10.20.90 77 9 75 2.41 3.20
1h4rA01 79.25 Negative regulation of cell-cell adhesionSchwann cell proliferationCytoskeletonNucleolusEarly endosome 3.10.20.90 78 6 73 2.80 3.83
1t0yA00 79.15 Caenorhabditis elegansTubulin-specific chaperone B 3.10.20.90 90 16 71 2.90 4.08
1z2mA02 78.70 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 10 80 3.90 4.84
1z2mA01 78.40 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 75 13 81 3.29 4.05
2fazA00 78.04 E3 ubiquitin-protein ligase UHRF1RNA polymerase II transcription factor activityProtein bindingCell proliferationSequence-specific DNA binding transcription factor activity 3.10.20.90 77 13 77 3.70 4.75
3ge3C00 77.86 Pseudomonas mendocinaToluene-4-monooxygenase system protein B 3.10.20.270 83 6 73 3.38 4.60
1oqyA01 77.83 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 3.10.20.90 79 13 81 3.89 4.80
2k9xA00 77.80 Ubiquitin related modifier 1Trypanosoma bruceiPutative uncharacterized protein 3.10.20.30 102 16 64 2.95 4.56
1wgdA00 77.49 Endoplasmic reticulum membraneHomo sapiensHomocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 proteinProtein binding 3.10.20.90 93 15 66 3.17 4.75
2he7A01 77.45 Tight junctionErythrocyte membrane protein band 4.1Homo sapiensBand 4.1-like protein 3Cell-cell junction 3.10.20.90 80 6 75 3.34 4.45
1h8cA00 75.45 Cytoplasmic sequestering of NF-kappaBHeat shock protein bindingFAS-associated factor 1CytosolPositive regulation of protein complex assembly 3.10.20.90 82 6 76 3.71 4.83
1oeyA00 74.76 Protein C-terminus bindingNeutrophil cytosol factor 2Leukocyte transendothelial migrationCellular defense responseSuperoxide anion generation 3.10.20.90 78 7 75 3.65 4.83
1uh6A00 74.26 Mus musculusUbiquitin-like protein 5Ubiquitin-like protein 5 3.10.20.90 100 15 58 2.82 4.86
1v2yA00 73.65 U11/U12 small nuclear ribonucleoprotein 25 kDa proteinMus musculus 3.10.20.90 105 9 60 2.88 4.80
1wxsA00 73.54 CytoplasmUbiquitin-fold modifier 1NucleusProtein ufmylationHomo sapiens 3.10.20.90 88 9 70 3.06 4.34
1ip9A00 73.51 MAPK signaling pathway - yeastMating projection tipIdentical protein bindingEstablishment of cell polarityPhosphatidylinositol-3-phosphate binding 3.10.20.240 85 15 70 3.41 4.83
1wmhB00 73.28 Partitioning defective 6 homolog alphaTranscription factor bindingViral reproductionHomo sapiens 3.10.20.240 82 4 73 3.64 4.97
1s3sH00 71.08 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 3.10.20.90 107 6 54 2.44 4.50
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Displaying entries 1 to 34 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1zud400
MQILFNDQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAGG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1zud400
MQILFNDQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAGG
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 21:21

Assigning to "3.10.20.30" based on similarity with "1f0zA00" (NWSI: 100, NWO: 100, SPS: 91.00, SPO: 100, RMSD: 2.12)

Flow stage update by auto on 28 Apr 2006 17:51

NW result present for Domain "1zud400"

Flow stage update by auto on 28 Apr 2006 17:48

All required files are present for Domain "1zud400"

Flow stage update by auto on 27 Apr 2006 17:32

Beginning processing for Domain "1zud400"

Insertion by auto on 15 Mar 2006 01:42

Final ChopClose added based on similarity with "1f0zA" [LEE: 0, LME: 0, MR: 0, LG: 0, SS: 91.00, SI: 100, SO: 100]