CATH Domain: 1zjaA03

1zjaA03

PDB 1zja, Chain A, Domain 3

CATH Code	Level Description	Links
2	Mainly Beta
2.60	Sandwich
2.60.40	Immunoglobulin-like
2.60.40.1180	Golgi alpha-mannosidase II	Gene3D
2.60.40.1180.15
2.60.40.1180.15.1
2.60.40.1180.15.1.1
2.60.40.1180.15.1.1.1
2.60.40.1180.15.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 1zjaA03

Domain	Start PDB Residue	Stop PDB Residue
1zjaA01	1	105
1zjaA01	176	479
1zjaA02	106	175
1zjaA03	480	557

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 2.60.40.1180.15.1.1.1.1 (SIMAX score < 5)

Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
1uokA03	91.00	Bacillus cereusOligo-1,6-glucosidase	2.60.40.1180	78	30	97	1.82	1.87
1j0hA04	86.70	NeopullulanaseGeobacillus stearothermophilus	2.60.40.1180	83	15	89	2.89	3.24
1wzlA04	85.69	Neopullulanase 2Thermoactinomyces vulgaris	2.60.40.1180	83	17	87	2.25	2.56
1iv8A05	84.15	Sulfolobus acidocaldariusGlycosyltrehalose-producing enzyme	2.60.40.1180	66	15	83	2.41	2.89
1gjwA02	84.03	Thermotoga maritimaMaltodextrin glycosyltransferase	2.60.40.1180	68	11	80	3.01	3.73
1ua7A02	82.73	Starch and sucrose metabolismBacillus subtilisAlpha-amylaseAlpha-amylase [EC:3.2.1.1]Metabolic pathways	2.60.40.1180	78	7	93	3.03	3.24
3cc1A02	82.66	BH1870 proteinBacillus halodurans	2.60.40.1180	84	17	85	3.44	4.01
1ea9C04	82.59	Bacillus sp.Cyclomaltodextrinase	2.60.40.1180	81	19	91	3.07	3.36
1lwjA03	82.00	4-alpha-glucanotransferase [EC:2.4.1.25]Thermotoga maritimaStarch and sucrose metabolism4-alpha-glucanotransferaseMetabolic pathways	2.60.40.1180	50	14	62	1.28	2.04
1eh9A02	81.08	Sulfolobus solfataricusMalto-oligosyltrehalose trehalohydrolase	2.60.40.1180	62	12	79	2.08	2.62
1m7xA03	79.54	Starch and sucrose metabolismMetabolic pathways1,4-alpha-glucan branching enzyme [EC:2.4.1.18]Glycogen biosynthetic process1,4-alpha-glucan-branching enzyme	2.60.40.1180	106	17	73	2.32	3.15
1ht6A02	79.18	Alpha-amylase type A isozymeHordeum vulgare	2.60.40.1180	57	7	66	2.52	3.78
3clwC01	78.80	Bacteroides fragilis NCTC 9343Conserved hypothetical exported protein	2.60.40.1180	100	12	77	3.19	4.14
1kwgA03	78.80	Beta-galactosidaseThermus thermophilus	2.60.40.1180	50	16	64	2.41	3.76
1gcyA02	78.01	Pseudomonas stutzeriGlucan 1,4-alpha-maltotetraohydrolase	2.60.40.1180	56	12	69	2.91	4.20
1f1sA03	77.07	Hyaluronate lyaseStreptococcus agalactiae serogroup III	2.60.220.10	82	1	62	2.57	4.13

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Domain ATOM Sequence

>pdb|1zjaA03
SYRDIDPSNADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMHIAETLIESSSPAAPAAGAASLELQPWQSGIYKVK

BLAST against CATH

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Domain COMBS Sequence

>pdb|1zjaA03
SYRDIDPSNADVYAYTRSQDGETYLVVVNFKAEPRSFTLPDGMHIAETLIESSSPAAPAAGAASLELQPWQSGIYKVK

BLAST against CATH

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Domain History Events (11)

Domain assigned by auto on 20 Oct 2008 14:21

Assigning to "2.60.40.1180" based on similarity with "1m53A03"